Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,357,395 – 1,357,494 |
Length | 99 |
Max. P | 0.635212 |
Location | 1,357,395 – 1,357,494 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.98 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -16.92 |
Energy contribution | -17.20 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1357395 99 + 22407834 ACAUAUCCUUCUACUCAUACCGUGUACA---AAAAAUGGUGAAAUAUCAUAAAUGUGGGGCUUUCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG .................((((((.....---....))))))......((((((((((.((((..((.....))..)))).))).)))))))........... ( -20.50) >DroSec_CAF1 114532 99 + 1 GCAUAUCCUUCUACUCAUACCGUGUACA---AAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG .....................((((...---......((((...))))(((((((((.((((..((.....))..)))).))).))))))))))........ ( -20.40) >DroSim_CAF1 118915 97 + 1 GCAUAUCCUUCUACUCAUACCG--UACA---AAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG (((((............((((.--....---......))))............((((.((((..((.....))..)))).))))...))))).......... ( -20.20) >DroEre_CAF1 132941 101 + 1 GGAUAUCCUUCUACCCAUACCGUGUACAUAAAAAAAAGGUAAAAUACCAUAAAUGUGGUGCU-CCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG ((....)).............((((.((((((.....((((...))))....(((..((.(.-.((.....))..)))..)))..)))))).))))...... ( -20.70) >DroYak_CAF1 117699 101 + 1 -GAUAUCCCUCUACUCAUACCGUGUACAUAAAAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG -....................((((.((((((.....((((...)))).....((((.((((..((.....))..)))).)))).)))))).))))...... ( -24.10) >consensus GCAUAUCCUUCUACUCAUACCGUGUACA___AAAAAAGGUGAAAUACCAUAAAUGUGGGGCUUCCCAAAAUGGCUGGCUGCAUAAUUUAUGCACACAAUUCG .....................((((............((((...))))(((((((((.((((..((.....))..)))).))).))))))))))........ (-16.92 = -17.20 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:49 2006