| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,281,652 – 13,281,744 |
| Length | 92 |
| Max. P | 0.836503 |
| Location | 13,281,652 – 13,281,744 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.76 |
| Mean single sequence MFE | -24.25 |
| Consensus MFE | -19.22 |
| Energy contribution | -19.28 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13281652 92 + 22407834 GCGGGUCUAUAGUCUUUAGCAGGGAUGUGAGACCUGUUCAAAUGGAAAAAAAGAAUCUCGUGAGGAGAAUCUGA-GAAUCAAACGAAAUGUAA ((((((((...(((((.....)))))...))))))))...............((.(((((.((......)))))-)).))............. ( -23.10) >DroSec_CAF1 16604 91 + 1 GCGGGUCUAUAGUCUUUAGCAGGGAUGUGAGACCGGCUCAAAUGGGAA-AGAGAAUCUCGUGAGGAGAAUCUGA-GAAUCGAUCGAAAUAUAA ((.(((((...(((((.....)))))...))))).))...........-...((.(((((.((......)))))-)).))............. ( -23.50) >DroSim_CAF1 18977 91 + 1 GCGGGUCUAUAGUCUUUAGCAGGGAUGUGAGACCGGCUCAAAUGGGAA-AAAGAAUCUCGUGAGGAGAAUCUGA-GUAUCGAACGAAAUAUAA ((.(((((...(((((.....)))))...))))).)).....(((...-..(((.((((.....)))).)))..-...)))............ ( -23.70) >DroEre_CAF1 16479 91 + 1 GCGGGUCUAUAGUCUUUAGCAGGGAUGUGAGACCGGCUCAAAUGGGAA-AUAGAAUCUUCGGAAGAGAGUCUAA-GAAUCGAACGAAAUAUAA ((.(((((...(((((.....)))))...))))).)).....(((...-.((((.(((.(....)))).)))).-...)))............ ( -23.90) >DroYak_CAF1 16754 90 + 1 GCGGGUCUAUAGUCUUUAGCAGGGAUGUGGGACCGGCUCAAAUGGGAA-AUUGAAUCUCUGGAAGAGAUUC-AA-GAAUCGAACGAAAUAUAA ((.(((((...(((((.....)))))...))))).)).....(((...-.(((((((((.....)))))))-))-...)))............ ( -28.20) >DroAna_CAF1 16752 87 + 1 GCGGGUCUGUAGUCU-UAGCAGGGAUGUGAGACCGGUUCCGAUGCGAU-UAGGGAUCC----AAGAUCCCCCACCAAUUCGAACGAAGUGAAA ...(((((...((((-(....)))))...))))).((((.(((.....-..((((((.----..))))))......))).))))......... ( -23.12) >consensus GCGGGUCUAUAGUCUUUAGCAGGGAUGUGAGACCGGCUCAAAUGGGAA_AAAGAAUCUCGUGAAGAGAAUCUAA_GAAUCGAACGAAAUAUAA ((.(((((...(((((.....)))))...))))).)).....(((......(((.((((.....)))).)))......)))............ (-19.22 = -19.28 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:16 2006