Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,273,158 – 13,273,253 |
Length | 95 |
Max. P | 0.852069 |
Location | 13,273,158 – 13,273,253 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -13.20 |
Energy contribution | -14.13 |
Covariance contribution | 0.93 |
Combinations/Pair | 1.10 |
Mean z-score | -1.68 |
Structure conservation index | 0.70 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13273158 95 + 22407834 CCAUAUCGAAUUGACCUUUAACUAUAUUACUCAUACGACAUUGAGCAUCAUUGUGCAAGUAUCUGUGUGGCCUAUGAGUAAUUCCUAAGUAAACC ....................(((..(((((((((((.((((.((((((....)))).....)).)))).)..)))))))))).....)))..... ( -16.40) >DroSec_CAF1 7836 95 + 1 CCAUAUCGAAUUGACCUUUAACUAUGUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCAUCUGUGUGGCCCAUGACUAAUUCAUAAGUAAACC ................((((..(((((((.((((..(((((...((((....))))..((....)))))))..)))).)))..))))..)))).. ( -14.70) >DroSim_CAF1 8064 93 + 1 CCAUAUCGAAUUGACCUUUAACUAUGUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCA-CUGUGUGGCCUAUGAGUAAUUCAUA-GAAAACC .....................((((((((((((((.(((((((.((((....))))...))-....))))).)))))))))..))))-)...... ( -24.60) >DroEre_CAF1 7915 84 + 1 CCAUAUCGCAAUGACCUUUAACUAUAUUGCUCAUACGCCAUUGAGCAUCAUUGUGCAAGCCUCUGAGUGGCCUAUGAGUAAUUU----------- .........................((((((((((.((((((.(((((....)))).......).)))))).))))))))))..----------- ( -20.61) >DroYak_CAF1 8192 95 + 1 CCAUAUCGAAUUGACCUUUAACUAUAUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCCUAUGAGUGGCCUAUGAGUAAUUCCUAAGUAUACC ....................(((..((((((((((.((((((.(((((....)))).......).)))))).)))))))))).....)))..... ( -21.21) >DroAna_CAF1 8153 76 + 1 CCAUUUUGGUAUGACCUUUAACUUUAUUACUCAUACG--------CACCAUUGGGCAAGCA--------ACGUAUGAGUAAUAUUCA---AAUCG .......((.....))........(((((((((((((--------.....(((......))--------))))))))))))))....---..... ( -16.00) >consensus CCAUAUCGAAUUGACCUUUAACUAUAUUACUCAUACGCCAUUGAGCAUCAUUGUGCAAGCAUCUGUGUGGCCUAUGAGUAAUUCAUA_GUAAACC .........................((((((((((.(((((((.(((....))).)).........))))).))))))))))............. (-13.20 = -14.13 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:15 2006