| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,263,528 – 13,263,625 |
| Length | 97 |
| Max. P | 0.784849 |
| Location | 13,263,528 – 13,263,625 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 89.91 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -13.25 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13263528 97 - 22407834 GUUUGUGGAGAAAGUGUGAAGGAAUAAAUCACGCACAGCAAAGCCAUUUUCCGGGAAAACAAAUAAAUAGUAAAAAUCAUGGAAAAAUCUGAGCAAU- ..((((..(((..((((((.........))))))............(((((((.((....................)).))))))).)))..)))).- ( -16.35) >DroSec_CAF1 6941 95 - 1 GUUUGUGGAGAAAGUGUGAAGGAAUAAAUCACGCACAGCAAAACCAUUUUCCGGGAAAACAAAUAAAUAGG--AAAUCAUGGAAAAAUCUGAGCAAU- ..((((..(((..((((((.........)))))).........(((((((((.................))--)))..)))).....)))..)))).- ( -18.53) >DroSim_CAF1 6889 97 - 1 GUUUGUGGAGAAAGUGUGAAGGAAUAAAUCACGCACAGCAACACCAUUUUCCGGGAAAACAAAUAAAUAGUAAAAAUCAUGGAAAAAUCUGAGCAAU- ..((((..(((..((((((.........))))))............(((((((.((....................)).))))))).)))..)))).- ( -16.35) >DroEre_CAF1 7031 96 - 1 GUUUGUGGAGAAAGUGUGAAGAAAUAAAACACGCACAACCAAAACAUUUUCCGUGAAAACAAACAAAUAAUACAAUUCAUGGAAAAAUCUGGGAA--A ((((.(((.....(((((...........)))))....))))))).(((((((((((..................))))))))))).........--. ( -18.37) >consensus GUUUGUGGAGAAAGUGUGAAGGAAUAAAUCACGCACAGCAAAACCAUUUUCCGGGAAAACAAAUAAAUAGUAAAAAUCAUGGAAAAAUCUGAGCAAU_ ..((((..(((..((((((.........))))))............(((((((.((....................)).))))))).)))..)))).. (-13.25 = -14.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:14 2006