| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,261,491 – 13,261,593 |
| Length | 102 |
| Max. P | 0.650332 |
| Location | 13,261,491 – 13,261,593 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 84.66 |
| Mean single sequence MFE | -29.88 |
| Consensus MFE | -18.19 |
| Energy contribution | -19.75 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.38 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13261491 102 - 22407834 UAUUUAGA---------UUUGGUCGUAGGCGUUGGUUUUCACCAAAACGCACGCAAGUUCUACGAAAAGAUUUUGCAAACGACGCCUAUGCACACAAAAACACUGAAAAAU ..(((((.---------((((((((((((((((((((((....)))))....(((((.(((......))).)))))...))))))))))).)).))))....))))).... ( -31.50) >DroPse_CAF1 5719 109 - 1 UCUUUUUAUUUAUUU--UUCUGUCGUAGGCGAUGGUUUAUGCCGAAUCGCACGCAAGUUCUACGAAAAGAUUUUGCAAGGGAAACCUAAGCACACAGAAACACUGAAAAAU ..............(--(((((((((((((((((((....)))..)))))((....)).))))))........(((.(((....)))..)))..))))))........... ( -30.90) >DroEre_CAF1 4890 101 - 1 UAUUUAGA---------UUUUGUCGUAGGCGUUGGUUUUCGCCA-AACGCACGCAAGUUCUACGAAAAGAUUUUGCAAACGACGCCUAUGCACACAAAAACACUGAAAAAU ..(((((.---------(((((((((((((((((......((..-...))..(((((.(((......))).)))))...)))))))))))...))))))...))))).... ( -30.80) >DroYak_CAF1 4857 100 - 1 UAU-UAGA---------UUUGGUCGUAGGCGUUGGUUUUCGCCA-AACGCACGCAAGUUCUACGAAAAGAUUUUGCAAACGACGCCUAUGCACACAAAAACACUGAAAAAU ..(-(((.---------(((((((((((((((((......((..-...))..(((((.(((......))).)))))...))))))))))).)).))))....))))..... ( -30.20) >DroAna_CAF1 5130 111 - 1 UCUUUUGAAUUAUUUUUUUUAGCCGUAGGCGUUGAUUUUUGCCAAAUCGCACGCAAGUUCUACGAAAAGAUUUUGCAAACGACGCUUAUGCACACAGAAACACUGAAAAAU .....................((.((((((((((.....(((......))).(((((.(((......))).)))))...))))))))))))...(((.....)))...... ( -25.40) >DroPer_CAF1 5727 109 - 1 UCUUUUUAUUUAUUU--UUCUGUCGUAGGCGAUGGUUUAUGCCGAAUCGCACGCAAGUUCUACGAAAAGAUUUAGCAAGGGAAACCUAAGCACACAGAAACACUGAAAAAU ..............(--(((((((((((((((((((....)))..)))))((....)).)))))).........((.(((....)))..))...))))))........... ( -30.50) >consensus UAUUUAGA_________UUUUGUCGUAGGCGUUGGUUUUCGCCAAAACGCACGCAAGUUCUACGAAAAGAUUUUGCAAACGACGCCUAUGCACACAAAAACACUGAAAAAU .....................(((((((((((((((....))).........(((((.(((......))).)))))....)))))))))).)).................. (-18.19 = -19.75 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:13 2006