Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,254,536 – 13,254,649 |
Length | 113 |
Max. P | 0.625891 |
Location | 13,254,536 – 13,254,649 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.67 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -19.01 |
Energy contribution | -19.85 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.37 |
Mean z-score | -1.80 |
Structure conservation index | 0.69 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13254536 113 - 22407834 -----AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUGGGUCGCCGGUUCCAUUCUGAUUUUAUCGCAUGGGCAUUGUUGUUGCUAUUUAGCAUGAAU -----.......(((((((...(((((((.......(((((((...(((((......))))))))))))((((..((((...)))).))))........)))))))...))))))).. ( -30.30) >DroSec_CAF1 35978 118 - 1 AUUGUAUAUUUGUCAUGUUCAUUGGCGGUUUCUUAAAAUUGGUCUAGGCCUUUGUUUAGGUCGCCGUUUCCAUUCUGAUUUUAUCGCAUGAGAAUUGUUGUUGCUAUUUAGCAUGAAU ............(((((((...(((((((..((((((...(((....)))....))))))..)))......(((((.((........)).))))).......))))...))))))).. ( -27.40) >DroSim_CAF1 31968 113 - 1 -----AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUAGGUCGCCGGUUCCAUUCUGAUUUUAUCGCAUGAGAAUUGUUGUUGCUAUUUAGCAUGAAU -----.......(((((((...(((((((..((((((...(((....)))....))))))..)))((((((((..((((...)))).))).)))))......))))...))))))).. ( -30.30) >DroEre_CAF1 29333 113 - 1 -----AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUCGGUCGCCGGCUCUUUUCUAAUUUCAUCGUAUAAGCAUUGUUGUUGCUAUUUAGCAUGAAU -----.......(((((((..(((((((((....((....(((....)))....))..))))))))).......................((((.......))))....))))))).. ( -25.10) >DroYak_CAF1 29543 113 - 1 -----AUAUUUGUCAUGUUCGUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUCAGGUCGCCAACUAUUCUCUGAUUUUAUCGUAGAAAGAUUGUUGUUGCUAUUUAGCAUGAAU -----.......(((((((.(((((((((((..((((...(((....)))))))...)))))))))))..((((.((((...)))).))))..................))))))).. ( -30.00) >DroPer_CAF1 42817 89 - 1 -----AUAUUUGUCAGGUCCAUUGGCAGCUUCUUAAAAUUGGUCUAGGCCUUUGUCUG-GUGAGCGGCUCU-----------------------UUGUUGCUGCUAUUUAGCAUGAAU -----.....((((((.....))))))(((.............((((((....)))))-)..((((((...-----------------------.....))))))....)))...... ( -21.70) >consensus _____AUAUUUGUCAUGUUCAUUGGCGGCUUCUUAAAAUUGGUCUAGGCCUUUGUUUAGGUCGCCGGCUCCAUUCUGAUUUUAUCGCAUGAGAAUUGUUGUUGCUAUUUAGCAUGAAU ............(((((((...(((((((.........(((((...(((((......)))))))))).........((((((........))))))...)))))))...))))))).. (-19.01 = -19.85 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:10 2006