Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,246,643 – 13,246,750 |
Length | 107 |
Max. P | 0.548866 |
Location | 13,246,643 – 13,246,750 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -28.05 |
Energy contribution | -28.67 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.81 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13246643 107 + 22407834 CGAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCAACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC .(((((((((((.....))))))..((((..........(((.....)))...((((..((((...(((....))).))))...)))).....)))))))))..... ( -32.30) >DroPse_CAF1 26573 104 + 1 UCGAAAAUGCAUUUACUCUGUCUGUUGCACACG---CUGGCGGCGCUGGCACUCGGAAGUGGCUCAGCGGCCACGCUGCCCACGGCGGCACAAAGCGUGUUCAGCAG .....................((((((.(((((---(((((..(((((((.(.(....).))).))))))))..((((((...))))))....))))))).)))))) ( -46.50) >DroSec_CAF1 27918 107 + 1 CCAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC ......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. ( -33.10) >DroSim_CAF1 23803 107 + 1 CCAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC ......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. ( -33.10) >DroEre_CAF1 21074 107 + 1 CCAAAAAUGCAAUUGCCUUGCAUCUCGCUCACUAUUUUGGCCGCCCUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUUAGCUC ......((((((.....))))))...(((((((....(((((((..((((.(.(....).))))).)))))))...(((........)))...)))).....))).. ( -30.90) >DroYak_CAF1 21207 107 + 1 CCAAAAAUGCAAUUGCCUUGCAUCUCGCUCACUAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC ......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. ( -32.50) >consensus CCAAAAAUGCAAUUGCCUUGCAUAUCGCUCACCAUUUUGGCCGCCUUGGCACUCGGAAGUGGCUAUGCGGCCACGCUGCCAACCUCCGCACCCAGUGUUUUCAGCUC ......((((((.....))))))..............(((((((..((((.(.(....).))))).))))))).((((..(((((........)).)))..)))).. (-28.05 = -28.67 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:09 2006