Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,246,016 – 13,246,147 |
Length | 131 |
Max. P | 0.844604 |
Location | 13,246,016 – 13,246,113 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 93.57 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -20.75 |
Energy contribution | -20.95 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.91 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13246016 97 - 22407834 UAGGCCCCAACAAAAUCGGUCGGUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAAAAGCUCAUCUCUGACAAA----AAAAGCUUA (((((..............(((((((...((((((.(((.......)))))))))..)))))))........(.(((....))))...----....))))) ( -23.70) >DroSec_CAF1 27280 99 - 1 UAGGCGCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAAAAGCUCAUCUCGGACAAAA--AAAAAGCUUA ..(((.....((((((.....))))))..((((((.(((.......)))))))))....)))........(((((..............--....))))). ( -22.37) >DroSim_CAF1 23160 101 - 1 UAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAAAAGCUCAUCUCGGCCAAAAAAAAAAAGCUUA ..((((....((((((.....))))))..((((((.(((..((......)).))).))))))...................))))................ ( -24.90) >DroEre_CAF1 20442 98 - 1 UAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGCCUCUGCCGAAGCCAAAAGCCGAACUCAAAAGCUCAUCUCGCCCAAA---AAAAAGCUUA ..(((.....((((((.....))))))..((((((.(((.......)))))))))....)))........(((((.............---....))))). ( -21.53) >DroYak_CAF1 20575 96 - 1 UAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCUCUGCCGAAGCCAAAAGCCGAACUCAAAAGCUCAUCUCGG--AUA---AAAAAGCUUU ..(((.....((((((.....))))))..((((((.(((.......)))))))))....))).......((((((........--...---....)))))) ( -21.86) >consensus UAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAAAAGCUCAUCUCGGACAAA___AAAAAGCUUA ..(((.....((((((.....))))))..((((((.(((.......)))))))))....)))........(((((....................))))). (-20.75 = -20.95 + 0.20)
Location | 13,246,043 – 13,246,147 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.23 |
Mean single sequence MFE | -25.94 |
Consensus MFE | -20.70 |
Energy contribution | -20.90 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.80 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13246043 104 - 22407834 CGAAGCCAAAGCAAACAGCAACAACAUACACAUGUAGGCCCCAACAAAAUCGGUCGGUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAA .((.(((...((.....))....((((....)))).)))..............(((((((...((((((.(((.......)))))))))..)))))))..)).. ( -27.90) >DroSec_CAF1 27309 104 - 1 CGAAGCCAAAGCAAACAGCAACAACACACACAAGUAGGCGCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAA .((.(((...((.....))......((......)).)))..........(((((..((.....((((((.(((.......)))))))))))..)))))..)).. ( -22.80) >DroSim_CAF1 23191 104 - 1 CGAAGCCAAAGCAAACAGCAACAACACACACAAGUAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAA ((((((....((.....)).................((((...........))))))))))..((((((.(((..((......)).))).))))))........ ( -23.20) >DroEre_CAF1 20470 104 - 1 CGAAGCCAAAACAAACAGCAACAACAUAUAGUUGUAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGCCUCUGCCGAAGCCAAAAGCCGAACUCAA .((...((((((.....(((((........))))).((((...........))))))))))..((((((.(((.((....))....))).))))))....)).. ( -27.00) >DroYak_CAF1 20601 104 - 1 CGAAGCCAAAGCAAACAGCAACAACAUGUGGUUGUAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCUCUGCCGAAGCCAAAAGCCGAACUCAA .((...((((((..(((((.((.....)).))))).((((...........))))))))))..((((((.(((..((......)).))).))))))....)).. ( -28.80) >consensus CGAAGCCAAAGCAAACAGCAACAACAUACACAUGUAGGCCCCAACAAAAUCGGUCGUUUUGAAGGCUUUAGGCCGUCACUGCCGAAGCCAAAAGCCGAACUCAA .((.(((...((.....))....((........)).)))..........(((((...(((...((((((.(((.......))))))))).))))))))..)).. (-20.70 = -20.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:08 2006