Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,244,873 – 13,245,005 |
Length | 132 |
Max. P | 0.998514 |
Location | 13,244,873 – 13,244,984 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -31.94 |
Consensus MFE | -21.09 |
Energy contribution | -21.57 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.31 |
Mean z-score | -2.32 |
Structure conservation index | 0.66 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13244873 111 + 22407834 AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAAAUAA-UCU-UUUGUAGUGCCCGGC--GACUUCGGUAGCUGGGCC--AUAAGGAAUUC ............((((.(((.((((((((((.......)))..((((....)))).......))-)))-)).)))(.(((((((--.((....)).))))))))--..))))..... ( -33.30) >DroVir_CAF1 21847 111 + 1 AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAA--UGAAAUUUUUUGCAGUGCCUGGC--CGCGUUUGUUGCCAGGCC--AUAAUUAAUAU ..((((((((.(.......).))))))))..(..(((((....((((....))))....--.....)))))..).(.(((((((--.((....)).))))))))--........... ( -26.22) >DroPse_CAF1 24356 114 + 1 AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGGGCACUCUAAUGAGUCUAAACUGAAUUUUUUCAUAGUUCCUGGC--GACUUCGGUUGCCGGGACA-AUCAAGAAUGA .....((.((((((((((.(((..(....)..))).)))))))((((....))))......((((....))))..((.((((((--(((....))))))))))).-.....))).)) ( -36.30) >DroMoj_CAF1 23101 113 + 1 AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAAUUGAAUUUUUUGAUUGUGUCUGAC--GGCGUUUGCUGUCAGGCC--AUAAAGAAUAC ...........(((((((.(((..(....)..)))))))).))((((....)))).........((((((((..((.(((((((--(((....)))))))))))--))))))))).. ( -30.20) >DroAna_CAF1 27671 113 + 1 AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAUACUAA-UUU-UUUGUAGGGCCUAGCAUGACUUC--UUGCCGGGCCCGAUAAAUAAUAA ...........(((((((.(((..(....)..)))))))).))((((....))))........(-((.-(((((.(((((..(((.......--.)))..))))).))))).))).. ( -29.90) >DroPer_CAF1 27712 114 + 1 AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGGGCACUCUAAUGAGUCUAAACUGAAUUUUUUCGUAGUUCCUGGC--GACUUCGGUUGCCGGGACA-AUCAAGAAUGA ........((((((((((.(((..(....)..))).)))))))((((....)))).......))).(((((.((.((.((((((--(((....))))))))))).-)).)))))... ( -35.70) >consensus AUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAACUGAAUUUUUUUGUAGUGCCUGGC__GACUUCGGUUGCCGGGCC__AUAAAGAAUAA ..((((((((.(.......).)))))))).(((..((((.....)))).))).........................(((((((..(((....)))))))))).............. (-21.09 = -21.57 + 0.48)
Location | 13,244,913 – 13,245,005 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 72.11 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -15.28 |
Energy contribution | -17.20 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.28 |
Mean z-score | -3.16 |
Structure conservation index | 0.57 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13244913 92 + 22407834 AACACUCUAAUGAGUCUAAAAUAA-UCU-UUUGUAGUGCCCGGC--GACUUCGGUAGCUGGGCC--AUAAGGAAUUCAUUGUAA----------AGUUUUUUGCUUAU- .......((((((((((...((((-...-.)))).(.(((((((--.((....)).))))))))--....)).))))))))..(----------(((.....))))..- ( -25.40) >DroSec_CAF1 26185 91 + 1 AACACUCUAAUGAGUCUAAAAUAA-UUUUUUUGUAGUGCCCGGC--GACUUUUGUAGCUGGGCC--AUAAGGAAUUCAUUGUAA----------GGUUUUU--UUUAA- ...((((....)))).....((((-(((((((((.(.(((((((--.((....)).))))))))--))))))))...)))))..----------.......--.....- ( -22.50) >DroSim_CAF1 22054 92 + 1 AACACUCUAAUGAGUCUAAAAUAA-UUUUUUUGUAGUGCCCGGC--GACUUCGGUAGCUGGGCC--AUAAUGAAUUCAUUAUAA----------GGUUUUU-GUUUAU- ...((((....))))...((((((-...((((...(.(((((((--.((....)).))))))))--((((((....))))))))----------))...))-))))..- ( -26.50) >DroYak_CAF1 19425 78 + 1 AACACUCUAAUGAGUCUAAAAUAA-UUU-UUUGUAGUGCCCGGU--GACUUCGGUUGCUGGGCC--AUAUGGAAUACAUUAUAA------------------------- ...((((....)))).....((((-(.(-((..((..((((((.--.((....))..)))))).--.))..)))...)))))..------------------------- ( -27.50) >DroAna_CAF1 27711 103 + 1 AGCACUCUAAUGAGUCUAUACUAA-UUU-UUUGUAGGGCCUAGCAUGACUUC--UUGCCGGGCCCGAUAAAUAAUAAAUUUUAAUCUAUCAUAAGUUCUUA-GUUUAC- ((.((((....))))))..(((((-...-(((((.(((((..(((.......--.)))..)))))((((..(((......)))...)))))))))...)))-))....- ( -26.10) >DroPer_CAF1 27752 102 + 1 GGCACUCUAAUGAGUCUAAACUGAAUUUUUUCGUAGUUCCUGGC--GACUUCGGUUGCCGGGACA-AUCAAGAAUGAAUGCCAAAAUCGAAU--GGGGCUU--UUUGAU (((((((....)))).........((((.(((.....(((((((--(((....))))))))))..-.....))).)))))))...((((((.--.......--)))))) ( -33.00) >consensus AACACUCUAAUGAGUCUAAAAUAA_UUU_UUUGUAGUGCCCGGC__GACUUCGGUAGCUGGGCC__AUAAGGAAUUCAUUAUAA__________GGUUUUU__UUUAA_ ...((((....))))..............(((((...(((((((...((....)).)))))))...)))))...................................... (-15.28 = -17.20 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:06 2006