| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,224,211 – 13,224,324 |
| Length | 113 |
| Max. P | 0.785366 |
| Location | 13,224,211 – 13,224,324 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.71 |
| Mean single sequence MFE | -36.69 |
| Consensus MFE | -22.07 |
| Energy contribution | -22.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13224211 113 + 22407834 CCGGAGCCACAGA---AGAAAUAUGUUCCGCCAAGGCGCCAUAACAGCAUGAAUGCUGGUCACA---GCAGGCAGCGAGAUCAAUCUGGCUCUGUUUUUGACCGCCUUGGCUUCAAUAA ..(((((......---........)))))(((((((((......(((((....)))))((((.(---((((..(((.(((....))).))))))))..)))))))))))))........ ( -42.94) >DroSec_CAF1 224 113 + 1 CCGGAACCGCAGA---AGAAAUAUGUUCCGCCAAGGCGCCAUAAUAGCAUGAAUGCUGGUCACA---GCAGGCAGCGAGAUCAAAAUGGCUCUGUUUUUGACCGCCUUGGCUUCAAUAA ..(((((......---........)))))(((((((((((((....((.((..(((((....))---)))..))))(....)...)))))((.......))..))))))))........ ( -39.24) >DroSim_CAF1 3770 113 + 1 CCGGAGCCGCAGA---AGAAAUAUGUUCCGCCAAGGCGCCAUAAUAGCAUGAAUGCUGGUCACA---GCAGGCAGCGAGAUCAAUCUGGCUCUGUUUUUGACCGCCUUGGCUUCAAUAA ..(((((......---........)))))((((((((........((((....))))(((((.(---((((..(((.(((....))).))))))))..)))))))))))))........ ( -42.54) >DroEre_CAF1 1343 116 + 1 CCAGAGCCGCAGAAGAAGAAAUAUGUUCCGCCAAGGCGCCAUAACAGCAUGAAUGCUGGUCAUA---ACAAGCACCGAGAUCAAUCUGGCUCUGUUUUUGACCGCCUUGGCUUCAAUAA ...........((((((.(....).))).(((((((((......(((((....)))))((((.(---((((((.(.((......)).)))).))))..))))))))))))))))..... ( -34.90) >DroWil_CAF1 215 116 + 1 CGUGAACCGCAAA---AGAAAUUCAUGGCACCCCGACGACACAAUAGCAUGAAUGCUGGUUCUAAUCGUAAGCCACGCGAUCAAUCGGGCUCUGUUUUUGAUCGUCUGGGAUUUAAUAA ((((((...(...---.)...))))))...(((.(((((..(((.((((.((..(((.(.....(((((.......)))))....).))))))))).))).))))).)))......... ( -28.60) >DroAna_CAF1 1362 116 + 1 CCAGAGCAACAAUAUAAGAUAUAUGUCGGCCCACGACGGCACAACAGCAUGAAUGCUGGCCAUA---CCAAGCCCCGCGGCUCAUCUGGUUCUGUUUUUGACCGCUUGGGCUUCAAUAA ........................((((.....))))(((....(((((....))))))))...---..((((((.((((.(((..............)))))))..))))))...... ( -31.94) >consensus CCGGAGCCGCAGA___AGAAAUAUGUUCCGCCAAGGCGCCAUAACAGCAUGAAUGCUGGUCACA___GCAAGCAGCGAGAUCAAUCUGGCUCUGUUUUUGACCGCCUUGGCUUCAAUAA .............................((((((((........((((....))))(((((.....((((((...............))).)))...)))))))))))))........ (-22.07 = -22.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:56 2006