Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,223,809 – 13,223,929 |
Length | 120 |
Max. P | 0.516822 |
Location | 13,223,809 – 13,223,929 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.92 |
Mean single sequence MFE | -35.32 |
Consensus MFE | -21.82 |
Energy contribution | -23.14 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.16 |
Mean z-score | -2.10 |
Structure conservation index | 0.62 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13223809 120 + 22407834 CCGGCGAAAAGAUUGUUAAGUUCGCCUCGACAGCGGAGGUUCGGGAAAUCGUUCCCGAAUCGGCAUACAAAAAUAGGCAGGGCAAAAGUUUUGCGAAUAAUAUUAAAUCAAGGCUCGGAA (((((.....((((.....((((((((((....))).((((((((((....)))))))))))))............(((((((....))))))))))).......))))...)).))).. ( -36.80) >DroSim_CAF1 3368 120 + 1 CCGGUGAAAAGAUUGUAAAGUUCGCCUCCACAGCAGAGGUUCGGGAAAUCGUUCCCGAAGCGGCAUACAAAAAUAGGCAAGGCAAAAGUUUUGCGAAUAACAUUAAAUCGAGGCUCGGAA ((((......((((....)))).(((((....((...(.((((((((....)))))))).).))............(((((((....)))))))...............))))))))).. ( -35.80) >DroEre_CAF1 941 120 + 1 CCGGAGAAAAGAUUGUUAAGUUCGCCUCCACAGCGGAGGUUCGGGAAAUCGCUCCCGAAGCGGCCUACAAAAAUAGGCACGGCAAAAAUUUUGCAAAUAACAUCAAAUCCAGGCUCGGAA (((.((....((((((((.....((((((.....))))))((((((......))))))..(((((((......))))).))((((.....))))...)))))....)))....))))).. ( -36.70) >DroYak_CAF1 371 120 + 1 CCGGUGAAAAGAUUGUUAAAUUCGCCUCCACAGCGGAGGUUCGGGAAAUCGCUCCCGAAGCGGCCUACAAAAAUAGGCACGGCAAAAAUUUUGCGAAUAACAUCAAAUCGAGGCUCGGAA ((((.(....((((((((..(((((((((.....))))))((((((......))))))..(((((((......))))).))((((.....))))))))))))....)))....))))).. ( -37.80) >DroAna_CAF1 954 120 + 1 UCGGUGAGAAGAUUGUGAAGUUUGCCUCAACGGCAGAAGUGCGGGAAAUUGCUCCCGAGUCGUCCUACAAAGCAAGACAUGGAAAGAAUCUGGCCAACAACAUUAAAACAAGGCUCGGAU ..((..(.....(((((...((((((.....))))))..)))))....)..)).((((((((((...........))).(((..((...))..)))...............))))))).. ( -29.50) >consensus CCGGUGAAAAGAUUGUUAAGUUCGCCUCCACAGCGGAGGUUCGGGAAAUCGCUCCCGAAGCGGCCUACAAAAAUAGGCACGGCAAAAAUUUUGCGAAUAACAUUAAAUCAAGGCUCGGAA ((((.(....((((.....(((((((((.......))).(((((((......)))))))((.(((((......)))))...)).........)))))).......))))....))))).. (-21.82 = -23.14 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:55 2006