Locus 4624

Sequence ID 2L_DroMel_CAF1
Location 13,223,625 – 13,223,735
Length 110
Max. P 0.867911
window7303

overview

Window 3

Location 13,223,625 – 13,223,735
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.54
Mean single sequence MFE -34.58
Consensus MFE -26.84
Energy contribution -26.60
Covariance contribution -0.24
Combinations/Pair 1.33
Mean z-score -1.94
Structure conservation index 0.78
SVM decision value 0.86
SVM RNA-class probability 0.867911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13223625 110 - 22407834
UCGUCGUCGCCUUUUUUAAGAGGCACUUUGUGAACUAGCAUGACCUUUUGCUGCGUU--------AC-AGCGGCCACCUUCUUCGCUUUCACAAUGGGCGAGUUCUUGGUGACCCCUCC-
..(((((.((((((....))))))....(((((..(((((........)))))..))--------))-))))))((((...(((((((.......))))))).....))))........- ( -33.70)
>DroSim_CAF1 3184 110 - 1
UCAUCGUCGCCUUUUUUUAAAGGCACUUUGUGAACGAGCAUGACCUUUUGCUGCGGC--------AA-AGCGGCCACCUUCUUCGCCUUUACAAUGGGCGAGUUCAUGGUGACCCCUCC-
(((((...((((((....)))))).....(((((((((..((.((((((((....))--------))-)).)).))..))).((((((.......))))))))))))))))).......- ( -37.70)
>DroEre_CAF1 750 111 - 1
UCAUCGUCGCCUUUUUUAAGAGGCACUUUGUGAACCAGCAUAACCUUUUGCUGCGGC--------AC-ACCGGCCAGCUUCUUGGCCUUCACAAUGGGCGAGUUCUUGGUAACCCCUCCU
...(((((((((((....)))))).(.(((((((((((((........))))).)..--------..-...((((((....))))))))))))).))))))......((........)). ( -36.40)
>DroYak_CAF1 181 110 - 1
UCAUCGUCGCCUUUUUUAAGAGGCACCUUGUGAACAAGCAUGACCUUUUGCUGCGGC--------AC-AGCGGCCACCUUCUUGGCCUUCACAAUGGGCGAGUUCUUGGUAACACCUCC-
...(((((((((((....)))))).(.(((((((..((((........))))((...--------..-.))(((((......)))))))))))).))))))......((.....))...- ( -35.00)
>DroAna_CAF1 758 116 - 1
UCAUCGUCUCCUCGCUUAAGUGGAACCUUGUGUACUAGCAUAACCUUUUGUUGUGGCUUCGUGGCAGACGCGGCAACAUUCUUUGCCUUAACGAUGGACGAGUUCUUGGUAACACC----
...((((((..(((.(((((.((((..((((((....)))))).....((((((.((.((......)).)).))))))))))....)))))))).))))))...............---- ( -30.10)
>consensus
UCAUCGUCGCCUUUUUUAAGAGGCACUUUGUGAACUAGCAUGACCUUUUGCUGCGGC________AC_AGCGGCCACCUUCUUCGCCUUCACAAUGGGCGAGUUCUUGGUAACCCCUCC_
...((((((((((......))))).(.(((((((.(((((........)))))..................(((((......)))))))))))).))))))......((.....)).... (-26.84 = -26.60 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:54 2006