Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,221,729 – 13,221,849 |
Length | 120 |
Max. P | 0.903198 |
Location | 13,221,729 – 13,221,849 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.67 |
Mean single sequence MFE | -40.65 |
Consensus MFE | -23.83 |
Energy contribution | -24.53 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.37 |
Mean z-score | -2.18 |
Structure conservation index | 0.59 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13221729 120 - 22407834 CAAGACGACGGCGCCAACUAUGCGGUGGCUCUUAAUGCCGCCACACUGGCGCUAAUUGAUGCGGGAAUCUGCCUCAAUGAGUUCAUUGUCGCCUGCACCGCCUCACUGAGCAAAUCGAAC .....(((.(((((((....((.((((((.......)))))).)).)))))))...(((.((((......((..(((((....)))))..)).....)))).))).........)))... ( -44.00) >DroVir_CAF1 5296 120 - 1 CAGGCGGAUGGCGCCAACUAUGCUGUAUCCCUAAAUGCCGCUACCCUGGCACUCAUUGAUGCGGGCAUAUGCCUAAACGAGUUCGUUGUUGCAUGCACCGCAUCUUUGAGCAAAUCAAAC ..((((.....)))).....(((............(((((......))))).(((..((((((((((..(((...((((....))))...)))))).)))))))..))))))........ ( -41.60) >DroGri_CAF1 6016 120 - 1 CAGGCGGAUGGUGCCAACUAUGCGGUGUCUCUAAACGCCGCCACACUGGCCCUAAUUGAUGCGGGCAUCUGCCUAAACGAAUUUGUUGUCGCCUGCACCGCAUCGUUGAGUAAAUCCAAC .....((((((.((((.....(((((((......))))))).....)))))).....((((((((((...((...((((....))))...)).))).))))))).........))))... ( -43.30) >DroWil_CAF1 5974 120 - 1 CAAGCUGAUGGAGCCAACUAUGCAGUGGCUCUUAAUGCCGCCACAUUGGCUCUGAUCGAUGCUGGUAUUUGCCUUAAUGAAUUCAUUGUGGCUUGCACAGCAUCACUAAGUAAAUCAAAU ...(((((((((((((...(((..(((((.......)))))..)))))))))).)))((((((((((...(((.(((((....))))).))).))).)))))))....)))......... ( -46.90) >DroMoj_CAF1 5218 120 - 1 CAAGCGGACGGUGCAAACUAUGCUGUUUCUCUAAACGCCGCCACUCUGGCACUUAUCGAUGCGGGCAUAUGUCUAAACGAAUUUGUUGUUGCCUGCACGGCAUCCCUAAGCAAUGCCAAC ..((.((.(((((((.....))).((((....)))))))))).)).(((((.....((.((((((((........((((....))))..))))))))))((........))..))))).. ( -33.00) >DroAna_CAF1 4514 120 - 1 CAGGCUGACGGAGCUAACUAUGCAGUGGCCCUCAAUGCAGCAACUCUGGCGCUGAUCGAUGCCGGCAUCUGCCUCAACGAACUGAUAGUGGCCUGCACCGCCUCCCUGAGCAAGAAUAAC ((((..(.(((.((..(((((.(((((((..((.((.((((.........)))))).)).)))(((....))).......))))))))).....)).))).)..))))............ ( -35.10) >consensus CAAGCGGACGGAGCCAACUAUGCAGUGGCUCUAAAUGCCGCCACACUGGCACUAAUCGAUGCGGGCAUCUGCCUAAACGAAUUCAUUGUCGCCUGCACCGCAUCACUGAGCAAAUCAAAC ...((....(((((((.....((.(((........))).)).....)))))))....((((((((((...((...((((....))))...)).))).))))))).....))......... (-23.83 = -24.53 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:53 2006