Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,220,942 – 13,221,062 |
Length | 120 |
Max. P | 0.561762 |
Location | 13,220,942 – 13,221,062 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.06 |
Mean single sequence MFE | -42.15 |
Consensus MFE | -27.50 |
Energy contribution | -26.75 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.33 |
Mean z-score | -1.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13220942 120 + 22407834 GGGAGCUAGCGAUGAAGCGUCUACGGUCGCGACUUGUGCAACAGCAGUUGGAGAGCGUUGAGGCUAGCAAAAUGGCCACCAAGAAGGCGCAACAGGGUAGUCUCAAUCGCAAUGAGAAGA .....(((((......(((.(....).)))......(((....))))))))...((((((((((((.(....(((((........))).))....).))))))))).))).......... ( -38.10) >DroPse_CAF1 16727 120 + 1 GCGAGCUGGCCCUGAAGCGUCUUCAGGCGCGGCUUGUGCAGCAGCAGCUGGAAAGCUCAGAAGCCAGCAAGCAGGCUACAAAGAAGGCGCAGCAGGGCAGCCUUAACAGGAACGAAAAGA ....((((.(((((..((((((((.(((((.((....)).)).(.((((....)))))....)))(((......))).....))))))))..)))))))))................... ( -49.20) >DroEre_CAF1 3876 120 + 1 GGGAGCUGGCCAUGAAGCGUCUGCGGUCGCGACUUGUGCAACAGCAGUUGGAGAGCGCCGAGGCUAGCAAGAUGGCCACCAAGAAGGCGCAACAGGGGAGUCUCAACCGCAAUGAGAAAA ((..(((........)))..))(((((.(.(((((.(.((((....))))....(((((..(((((......)))))........))))).....).))))).).))))).......... ( -39.30) >DroYak_CAF1 3935 120 + 1 GGGAGCUGGCCAUGAAGCGUCUGCGGUCGCGGCUUGUGCAACAGCAGUUGGAGAGCGUUGAGGCUAACAAGAUGGCCACCAAGAAGGCGCAACAGGGAAGUCUCAACCGAAAUGAGAAGA (((((((..((.((..((((((..(((.((.((((((((..((((.(((....)))))))..))..))))).).)).)))....))))))..)).)).)).)))..))............ ( -37.20) >DroAna_CAF1 3873 120 + 1 GGGAGUUAGCCAUGAGUCGCCUGCGUUCCCGGUUAGUGCAGCGGCAGCUGGAAAGCGCCGAAGCCAGUACAAAGGCCACUAAGAAGGCGCAACAGGGAAGUCUCAACCGCAAUGAAAAAA ((((.(((....))).)).))(((((((((.(((.((((..((((.(((....)))))))..(((........)))..........))))))).)))))........))))......... ( -38.40) >DroPer_CAF1 18360 120 + 1 GCGAGCUGGCCCUGAAGCGUCUUCAGGCGCGGCUUGUGCAGCAGCAGCUGGAAAGCUCAGAGGCCAGCAAGCAGGCUACAAAGAAGGCGCAGCAGGGCAGCCUCAACAGGAACGAAAAGA ..((((((.(((((..((((((((.(((((.((....)).)).(.((((....)))))....)))(((......))).....))))))))..)))))))).)))................ ( -50.70) >consensus GGGAGCUGGCCAUGAAGCGUCUGCGGUCGCGGCUUGUGCAACAGCAGCUGGAAAGCGCAGAGGCCAGCAAGAAGGCCACCAAGAAGGCGCAACAGGGAAGUCUCAACCGCAAUGAAAAGA ..(((((..((.((..((((((.(....(((.(((...((((....))))..))))))...((((........)))).....).))))))..))))..)).)))................ (-27.50 = -26.75 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:52 2006