Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,215,080 – 13,215,200 |
Length | 120 |
Max. P | 0.819635 |
Location | 13,215,080 – 13,215,200 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -21.61 |
Energy contribution | -22.18 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.93 |
Structure conservation index | 0.85 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13215080 120 + 22407834 CCAGAUUUAGAAAAACAAUAUAAAUUUACUAUCGCGCCACGCCUUAAGCUCGUUUCGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUUCAUCAACUGUUUUUCUAUUUUGGUACUGCCC (((((..((((((((((.((......)).....(((((..((.....))..(((((...............)))))...)))))............)))))))))).)))))........ ( -24.66) >DroSec_CAF1 2374 117 + 1 CCAGAUUUAGAAAAACAAUAUAAAUUUACUAUCGCGCCACGCCUUAAGCUCGUUUCGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUC---CAACUGUUUUUCUAUUUUGGUACUGCCC (((((..((((((((((.((......)).....(((((..((.....))..(((((...............)))))...))))).....---....)))))))))).)))))........ ( -24.66) >DroEre_CAF1 2657 120 + 1 CCAGAUAUAGAAAAACAAUAUAAAUUUACUAUCCCGCCACGCCUAAAGCUCGUUUAGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUCCAGCAACUGUUUUUCUAUUUUGGUACUGCCC (((((.(((((((((((.((......))..........(((((.....(((....((((....))))....))).....)))))............))))))))))))))))........ ( -26.70) >DroYak_CAF1 7243 120 + 1 CCAGAUAUAGAAAAACAAUAUAAAUUUAUUAUCCCGCCACGCCUUAAGCUCGCUUCGAAAAUGUUCUUCCAGGUGCCUCGGCGUAUAUCCGUCAACUGUUUUUCUAUUUUGGUACUGCCC (((((.((((((((((((((......))))........(((((...((..(((((.(((.......))).))))).)).))))).............)))))))))))))))........ ( -26.00) >consensus CCAGAUAUAGAAAAACAAUAUAAAUUUACUAUCCCGCCACGCCUUAAGCUCGUUUCGAAAAUGUUCUUCCAGAGACCUCGGCGUAUAUCCAUCAACUGUUUUUCUAUUUUGGUACUGCCC (((((.(((((((((((.((......))..........(((((.....(((.....(((....))).....))).....)))))............))))))))))))))))........ (-21.61 = -22.18 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:46 2006