Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,208,518 – 13,208,611 |
Length | 93 |
Max. P | 0.929778 |
Location | 13,208,518 – 13,208,611 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 64.59 |
Mean single sequence MFE | -20.11 |
Consensus MFE | -14.34 |
Energy contribution | -13.41 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.40 |
Mean z-score | -1.20 |
Structure conservation index | 0.71 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13208518 93 + 22407834 GUGGCAGUUUAUUAAAAAG------------GGAAUGCAC--------AC---ACACUUACCUUAUGUACAUCUUGCCUUAACCUUUAAUAAGCUGCCAGUUGUCUUGUAAAGCAC .((((((((((((((((((------------(.((((.((--------(.---............))).)))..).))))....)))))))))))))))................. ( -22.52) >DroSim_CAF1 15389 101 + 1 GUGGCAGUUUAUUGAAAAG------------GGAAUGCAAUUUUAAAUCC---ACGUCAGACUUUUUUACACUUUACCUUGACCUUUAAUGAGCUGCCAGAUGUCUUGUAACGCAC .(((((((((((((((...------------(((.............)))---..(((((..................))))).)))))))))))))))................. ( -22.59) >DroEre_CAF1 19795 80 + 1 GUGGCAGUUUAUUGAAAAG------------GGAAUCC------------------------AUAUGUAACCUUUGCCUUGAUCUUUAAUAAACUGUUAGUUGUCUUAUAACGCAC .((((((((((((((((((------------(.((...------------------------...........)).))))....)))))))))))))))(((((...))))).... ( -18.24) >DroYak_CAF1 15886 108 + 1 UUGGCGGUUUAUAAAAAAUAUUUUGAAAUUUGAAAUCUAC--------AUACGACACAUACGAUUUGUAUACGUUGCCGUGACCUUUAAUUAACCGCUAGUUGUCUUGUAACGCAC .((((((((..((((....((((..(...)..))))...(--------((.((((..((((.....))))..))))..)))...))))...))))))))((((.....)))).... ( -17.10) >consensus GUGGCAGUUUAUUAAAAAG____________GGAAUCCAC________AC___ACAC_UACCAUAUGUACACUUUGCCUUGACCUUUAAUAAACUGCCAGUUGUCUUGUAACGCAC .(((((((((((((((....................................................................)))))))))))))))................. (-14.34 = -13.41 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:42 2006