Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,195,392 – 13,195,484 |
Length | 92 |
Max. P | 0.686889 |
Location | 13,195,392 – 13,195,484 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 71.01 |
Mean single sequence MFE | -14.51 |
Consensus MFE | -8.20 |
Energy contribution | -8.57 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.30 |
Mean z-score | -1.62 |
Structure conservation index | 0.56 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13195392 92 - 22407834 ACUGGUGGCACAAUGGUUACCAACCAGAGUGUCAAACUAAAUGCAAACGAAACCAAAAAGC--------AGAA-CAGAAAAAAACUUACAUUAUAGAAACU .(((.((((((..((((.....))))..)))))).......(((...............))--------)...-)))........................ ( -16.06) >DroGri_CAF1 2109 86 - 1 GCUGAUGGCAU----UUUAGCUAUUAAACUGUUAA--------CCAACAAAU--UAUAAU-GUGUGAAGAGAUCGAACAGAAAACUUACAUUAUAGAAACU ..(((((((..----....)))))))...((((..--------..))))..(--((((((-(((...((...((.....))...))))))))))))..... ( -13.10) >DroSec_CAF1 2326 81 - 1 ACUGGUGGCGCACUGGUUACCAACCAGAGUGUCAA-----------ACGAAACCAAAAAGC--------AGAA-CAGAAAAAAACUUACAUUAUAGAAACU .(((.((((((.(((((.....))))).)))))).-----------..(....).......--------....-)))........................ ( -15.40) >DroSim_CAF1 2324 81 - 1 ACUGGUGGCGCAAUGGUUACCAGCCAGAGUGUCAG-----------ACGAAACCAAAAAGC--------AGAA-CAGAAAAAAACUUACAUUAUAGAAACU .(((.((((((..((((.....))))..)))))).-----------..(....).......--------....-)))........................ ( -13.50) >consensus ACUGGUGGCACAAUGGUUACCAACCAGAGUGUCAA___________ACGAAACCAAAAAGC________AGAA_CAGAAAAAAACUUACAUUAUAGAAACU .....((((((..((((.....))))..))))))................................................................... ( -8.20 = -8.57 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:39 2006