Locus 4614

Sequence ID 2L_DroMel_CAF1
Location 13,193,445 – 13,193,561
Length 116
Max. P 0.614483
window7287

overview

Window 7

Location 13,193,445 – 13,193,561
Length 116
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -35.62
Consensus MFE -23.73
Energy contribution -23.82
Covariance contribution 0.09
Combinations/Pair 1.21
Mean z-score -1.45
Structure conservation index 0.67
SVM decision value 0.16
SVM RNA-class probability 0.614483
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13193445 116 - 22407834
UUUGCAGGAGAGCGGCAUAAGCUCAUCAGCUGGAUAGGCGUUCUGCAUGUAGGCGUUGUAUGCAUGAUAGAACAUAUCGCGAGCCUCUUCCCUGAAAGCAAA--UGGAACAUAUUGUA
....((((..((.(((....((..(((.....)))..))((((((((((((.((...)).)))))).)))))).........))).))..))))...(((((--((...))).)))). ( -35.00)
>DroPse_CAF1 201 117 - 1
UUUGCAGGAGAGAGGCAUCAGCUCGUCGGCUGGAUAGGCAUUUUCCAUAUAAGCACGAUAUGCAUGAUAGAACAUGUCGCGGGCCUCUUCCCUGCAGUCAAAAAUGGAGUA-AGAGUA
.(((((((..((((((.((((((....))))))...(((((.(((.((....(((.....)))...)).))).)))))....))))))..)))))))..............-...... ( -40.00)
>DroEre_CAF1 3697 114 - 1
CUUGCAGGAGAGCGGCAUUAGCUCAUCAGCUGGAUAGGCGUUCUGCAUGUAGGCGUUAUAUGCGUGAUAGAACAUAUCGCGAGCUUCUUCCCUGAAAUCAAA----GAACAUAUUACA
(((((((.((((((.(.((((((....))))))...).)))))).).)))))).((.((((((((((((.....)))))))...(((((...((....))))----)))))))).)). ( -33.30)
>DroYak_CAF1 759 116 - 1
UUUGCAGGAGAGCGGCAUUAGCUCAUCGGCAGGAUAGGCGUUCUGCAUGUAGGCGUUAUAUGCAUGAUAAAACAUAGCGCGAGCUUCUUCCCUGAAAUCAAA--CAGAACAUGUUGCA
...........(((((((..((..(((.....)))..))(((((((((((((...)))))))).((((........((....))(((......)))))))..--.)))))))))))). ( -31.90)
>DroAna_CAF1 240 116 - 1
UUUACAGGACAGUGGCAUUAGUUCGUCGGCCGGAUAGGCGUUCUCCAUGUAGGCACGAUAAGCAUGGUAGAACAUAUCCCGGGCCUCUUCCCUGCGAUUAGA--UCGAAAAGUUAGGA
....((((.....(((........)))(((((((((...(((((((((((...........)))))).))))).)))))..)))).....))))((((...)--)))........... ( -33.50)
>DroPer_CAF1 201 117 - 1
UUUGCAGGAGAGAGGCAUCAGCUCGUCGGCUGGAUAGGCAUUUUCCAUAUAAGCACGAUAUGCAUGAUAGAACAUGUCGCGGGCCUCUUCCCUGCAGUCAAAAAUGGAGUA-AGAGUA
.(((((((..((((((.((((((....))))))...(((((.(((.((....(((.....)))...)).))).)))))....))))))..)))))))..............-...... ( -40.00)
>consensus
UUUGCAGGAGAGCGGCAUUAGCUCAUCGGCUGGAUAGGCGUUCUCCAUGUAGGCACGAUAUGCAUGAUAGAACAUAUCGCGAGCCUCUUCCCUGAAAUCAAA__UGGAACAUAUAGUA
....((((..((.(((....((..(((.....)))..))((((..((((((.........))))))...)))).........))).))..))))........................ (-23.73 = -23.82 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:39 2006