Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,193,237 – 13,193,348 |
Length | 111 |
Max. P | 0.998895 |
Location | 13,193,237 – 13,193,348 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -20.66 |
Energy contribution | -22.26 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.06 |
Mean z-score | -2.44 |
Structure conservation index | 0.83 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13193237 111 + 22407834 AAUUUGUUUAAAUGUAACCCAUAUAUGCGUCAGAAACGACGAGGUCAAAUUAGCAUAACUCGUUUUUAAUCAUUUAUGGAUAUACAUUUAAAUGUGAUGCUUAUAAAAACG--------- .....(((((((((((..(((((.(((.((.((((((((....((.......)).....)))))))).))))).)))))...)))))))))))..................--------- ( -22.30) >DroSec_CAF1 173 109 + 1 AAUUUGUUUAAAUGUAACCCAUAUAUGCAUCAGAAACGAGGAGGUCAAAUUAGCAUAACUCGUUUUUAAUCAUUUAUGGAUAUACAUUUAAAUGACAUGUUU--UAAAGCG--------- ...(..((((((((((..(((((.(((.((.(((((((((...((.......))....))))))))).))))).)))))...))))))))))..).......--.......--------- ( -27.90) >DroSim_CAF1 173 111 + 1 UAUUUGUUUAAAUGUAACCCAUAUAUGCAUCAGAAACGAGGAGGUCAAAUUAGCAUAACUCGUUUUUAAUCAUUUAUGGAUAUACAUUUAAAUGGCAUGCUUAUAAAAACG--------- ...(..((((((((((..(((((.(((.((.(((((((((...((.......))....))))))))).))))).)))))...))))))))))..)................--------- ( -27.90) >DroEre_CAF1 3478 120 + 1 AAUUUAUUUAAAUGUAACCCAUAUAAGCAUCAGAAACGAGGAGGUCAAAUUAGCAUAACUCGUUGGUAAUCAUUUAUGGUUUUUAAUUUAAAUGUGGUGCUUAUAAAUACCACUAUAAAA .....((((((((..((.(((((...........((((((...((.......))....))))))..........))))).))...))))))))((((((........))))))....... ( -22.60) >DroYak_CAF1 565 103 + 1 AACUUAUUUAAAUCUAACCCAUAUAUGCAUCAGAAACGAGGAGGUCUAAUUAGCAUAACUCGUUGGUGAUCAUUUAUGGUUAUAAAUUUA-AUGUGGUGCUUGU---------------- .(((...((((((.((..(((((.(((.((((..((((((...((.......))....))))))..))))))).)))))...)).)))))-)...)))......---------------- ( -23.50) >consensus AAUUUGUUUAAAUGUAACCCAUAUAUGCAUCAGAAACGAGGAGGUCAAAUUAGCAUAACUCGUUUUUAAUCAUUUAUGGAUAUACAUUUAAAUGUGAUGCUUAUAAAAACG_________ ....((((((((((((..(((((.(((.((.(((((((((...((.......))....))))))))).))))).)))))...)))))))))))).......................... (-20.66 = -22.26 + 1.60)
Location | 13,193,237 – 13,193,348 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -21.00 |
Energy contribution | -22.60 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.06 |
Mean z-score | -3.38 |
Structure conservation index | 0.82 |
SVM decision value | 3.27 |
SVM RNA-class probability | 0.998895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13193237 111 - 22407834 ---------CGUUUUUAUAAGCAUCACAUUUAAAUGUAUAUCCAUAAAUGAUUAAAAACGAGUUAUGCUAAUUUGACCUCGUCGUUUCUGACGCAUAUAUGGGUUACAUUUAAACAAAUU ---------.((((....))))......((((((((((.(((((((.(((.(((.((((((((((........))))....)))))).)))..))).)))))))))))))))))...... ( -25.30) >DroSec_CAF1 173 109 - 1 ---------CGCUUUA--AAACAUGUCAUUUAAAUGUAUAUCCAUAAAUGAUUAAAAACGAGUUAUGCUAAUUUGACCUCCUCGUUUCUGAUGCAUAUAUGGGUUACAUUUAAACAAAUU ---------.......--..........((((((((((.(((((((.(((((((.(((((((.....(......).....))))))).)))).))).)))))))))))))))))...... ( -27.60) >DroSim_CAF1 173 111 - 1 ---------CGUUUUUAUAAGCAUGCCAUUUAAAUGUAUAUCCAUAAAUGAUUAAAAACGAGUUAUGCUAAUUUGACCUCCUCGUUUCUGAUGCAUAUAUGGGUUACAUUUAAACAAAUA ---------.((((....))))......((((((((((.(((((((.(((((((.(((((((.....(......).....))))))).)))).))).)))))))))))))))))...... ( -28.80) >DroEre_CAF1 3478 120 - 1 UUUUAUAGUGGUAUUUAUAAGCACCACAUUUAAAUUAAAAACCAUAAAUGAUUACCAACGAGUUAUGCUAAUUUGACCUCCUCGUUUCUGAUGCUUAUAUGGGUUACAUUUAAAUAAAUU .......(((((..........)))))(((((((((((...(((((...(((((..((((((.....(......).....))))))..)))).)...))))).))).))))))))..... ( -21.70) >DroYak_CAF1 565 103 - 1 ----------------ACAAGCACCACAU-UAAAUUUAUAACCAUAAAUGAUCACCAACGAGUUAUGCUAAUUAGACCUCCUCGUUUCUGAUGCAUAUAUGGGUUAGAUUUAAAUAAGUU ----------------............(-((((((((...(((((.(((((((..((((((.....((....)).....))))))..)))).))).)))))..)))))))))....... ( -24.30) >consensus _________CGUUUUUAUAAGCAUCACAUUUAAAUGUAUAUCCAUAAAUGAUUAAAAACGAGUUAUGCUAAUUUGACCUCCUCGUUUCUGAUGCAUAUAUGGGUUACAUUUAAACAAAUU ............................((((((((((.(((((((.(((((((.(((((((.....(......).....))))))).)))).))).)))))))))))))))))...... (-21.00 = -22.60 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:38 2006