Locus 4612

Sequence ID 2L_DroMel_CAF1
Location 13,192,618 – 13,192,738
Length 120
Max. P 0.983433
window7284

overview

Window 4

Location 13,192,618 – 13,192,738
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -36.10
Consensus MFE -36.32
Energy contribution -36.10
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.64
Structure conservation index 1.01
SVM decision value 1.94
SVM RNA-class probability 0.983433
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13192618 120 + 22407834
AGGUCGACAUUUCGGGCACAGGUAAGCCUAAUUUCAGUCGAACAAAAUUACUUGUUAAGUUAUAAGCUAAUUAUGAGUUGGCUGUUUCAAUUAGGCUGCAGAGCCAAUUCAAGCGGACCA
.((((((....)).(((....(((.((((((((.(((((((.((.((((((((((......))))).))))).))..)))))))....)))))))))))...)))..........)))). ( -36.50)
>DroSec_CAF1 13014 120 + 1
AGGUCGACAUUUCGGGCACAGGUAAGCCUAAUUUCAGUCGAACAAAAUUACUUGUUAAGUUAUAAGCUAAUUAUGAGUUGGCUGUUUCAAUUAGGCUGCAGAGCCAAAUCAAGCGGGCCA
.((((((....)).(((....(((.((((((((.(((((((.((.((((((((((......))))).))))).))..)))))))....)))))))))))...)))..........)))). ( -35.90)
>DroSim_CAF1 12954 120 + 1
AGGUCGACAUUUCGGGCACAGGUAAGCCUAAUUUCAGUCGAACAAAAUUACUUGUUAAGUUAUAAGCUAAUUAUGAGUUGGCUGUUUCAAUUAGGCUGCAGAGCCAAAUCAAGCGGGCCA
.((((((....)).(((....(((.((((((((.(((((((.((.((((((((((......))))).))))).))..)))))))....)))))))))))...)))..........)))). ( -35.90)
>consensus
AGGUCGACAUUUCGGGCACAGGUAAGCCUAAUUUCAGUCGAACAAAAUUACUUGUUAAGUUAUAAGCUAAUUAUGAGUUGGCUGUUUCAAUUAGGCUGCAGAGCCAAAUCAAGCGGGCCA
.((((((....)).(((....(((.((((((((.(((((((.((.((((((((((......))))).))))).))..)))))))....)))))))))))...)))..........)))). (-36.32 = -36.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:36 2006