Locus 461

Sequence ID	2L_DroMel_CAF1
Location	1,350,485 – 1,350,582
Length	97
Max. P	0.993920

overview

Window 2

Location	1,350,485 – 1,350,582
Length	97
Sequences	5
Columns	103
Reading direction	forward
Mean pairwise identity	86.02
Mean single sequence MFE	-18.48
Consensus MFE	-13.70
Energy contribution	-15.42
Covariance contribution	1.72
Combinations/Pair	1.10
Mean z-score	-2.43
Structure conservation index	0.74
SVM decision value	1.33
SVM RNA-class probability	0.942775
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1350485 97 + 22407834
UAAAAAAUCGCAGAUCUUGUUUGAGCAUCGUGCUUUUGACGCUCACAAUUAUUAUUAUUUUUGCUCCUCAUGGCACUUUCCAUUUUAUGCGAUUUUC------
...(((((((((.....((..(((((.(((......))).)))))................((((......)))).....)).....))))))))).------ ( -21.30)
>DroSec_CAF1 106997 97 + 1
UAAAAAAUCGCAGAUCUUGUUUGAGCAUCGUGCUUUUGACGCUCACAAUUAUUAUUAUUUUUGCUCCUCAUGGCACUUUCCAUUUUAUGUGAUUUUC------
...(((((((((.....((..(((((.(((......))).)))))................((((......)))).....)).....))))))))).------ ( -19.40)
>DroSim_CAF1 112013 97 + 1
UAAAAAAUCGCAGAUCUUGUUUGAGCAUCGUGCUUUUGACGCUCACAAUUAUUAUUAUUUUUGCUCCUCAUGGCACUUUCCAUUUUAUGCGAUUUUC------
...(((((((((.....((..(((((.(((......))).)))))................((((......)))).....)).....))))))))).------ ( -21.30)
>DroEre_CAF1 123686 81 + 1
UAAAAAAUCGCAGAUUUCGU---------------UUGACGCUCACAAUUAUUUUUACUUUUACUCCUCAUGGCACUUUCCAUUUUAUGCGAUUUC-------
....((((((((((...((.---------------....)).)).........................((((......))))....)))))))).------- ( -10.20)
>DroYak_CAF1 110740 103 + 1
UGCAAAAUCGCAGAUCUUGUUUGAGCAGCGCUCUUUUGACGCUCGCAAUUAUUAUUAUUUUUACUCCUCAUGGCACUUUCCAUUUUAUGCGAUUUUCUUUACA
...(((((((((............((((((.((....)))))).)).......................((((......))))....)))))))))....... ( -20.20)
>consensus
UAAAAAAUCGCAGAUCUUGUUUGAGCAUCGUGCUUUUGACGCUCACAAUUAUUAUUAUUUUUGCUCCUCAUGGCACUUUCCAUUUUAUGCGAUUUUC______
...(((((((((.........(((((.(((......))).)))))........................((((......))))....)))))))))....... (-13.70 = -15.42 +   1.72)

alignment

secondary structure

dotplot

Window 3

Location	1,350,485 – 1,350,582
Length	97
Sequences	5
Columns	103
Reading direction	reverse
Mean pairwise identity	86.02
Mean single sequence MFE	-21.30
Consensus MFE	-17.10
Energy contribution	-18.78
Covariance contribution	1.68
Combinations/Pair	1.08
Mean z-score	-2.80
Structure conservation index	0.80
SVM decision value	2.44
SVM RNA-class probability	0.993920
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1350485 97 - 22407834
------GAAAAUCGCAUAAAAUGGAAAGUGCCAUGAGGAGCAAAAAUAAUAAUAAUUGUGAGCGUCAAAAGCACGAUGCUCAAACAAGAUCUGCGAUUUUUUA
------((((((((((....((((......))))........................((((((((........)))))))).........)))))))))).. ( -25.10)
>DroSec_CAF1 106997 97 - 1
------GAAAAUCACAUAAAAUGGAAAGUGCCAUGAGGAGCAAAAAUAAUAAUAAUUGUGAGCGUCAAAAGCACGAUGCUCAAACAAGAUCUGCGAUUUUUUA
------(((((((.......((((......)))).....(((...(((((....)))))(((((((........)))))))..........)))))))))).. ( -21.10)
>DroSim_CAF1 112013 97 - 1
------GAAAAUCGCAUAAAAUGGAAAGUGCCAUGAGGAGCAAAAAUAAUAAUAAUUGUGAGCGUCAAAAGCACGAUGCUCAAACAAGAUCUGCGAUUUUUUA
------((((((((((....((((......))))........................((((((((........)))))))).........)))))))))).. ( -25.10)
>DroEre_CAF1 123686 81 - 1
-------GAAAUCGCAUAAAAUGGAAAGUGCCAUGAGGAGUAAAAGUAAAAAUAAUUGUGAGCGUCAA---------------ACGAAAUCUGCGAUUUUUUA
-------(((((((((....((((......))))((.(..((....((....))....))..).))..---------------........)))))))))... ( -13.70)
>DroYak_CAF1 110740 103 - 1
UGUAAAGAAAAUCGCAUAAAAUGGAAAGUGCCAUGAGGAGUAAAAAUAAUAAUAAUUGCGAGCGUCAAAAGAGCGCUGCUCAAACAAGAUCUGCGAUUUUGCA
.......(((((((((....((((......))))(((..((((............)))).(((((.......))))).)))..........)))))))))... ( -21.50)
>consensus
______GAAAAUCGCAUAAAAUGGAAAGUGCCAUGAGGAGCAAAAAUAAUAAUAAUUGUGAGCGUCAAAAGCACGAUGCUCAAACAAGAUCUGCGAUUUUUUA
.......(((((((((....((((......)))).....................(((((((((((........)))))))..))))....)))))))))... (-17.10 = -18.78 +   1.68)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:45 2006