Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,189,084 – 13,189,201 |
Length | 117 |
Max. P | 0.736956 |
Location | 13,189,084 – 13,189,201 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -39.84 |
Consensus MFE | -28.66 |
Energy contribution | -29.30 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.31 |
Mean z-score | -1.61 |
Structure conservation index | 0.72 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13189084 117 + 22407834 AUCCGCAGGUACAUGGGCCAGCAUCAGCUGGUUGUAAUUAAUGUGCGAGCUUCGCUGGGAGAGCAGUUCCUGGUUAACUCGCCUCAGGUCCACAUGCUCGCAGUUAAGCUUAAAAAC ........((((((.(((((((....))))))).......))))))((((((.((((...(((((((.(((((..........)))))...)).))))).)))).))))))...... ( -39.10) >DroPse_CAF1 11196 117 + 1 AUCCGCAGGCACAUGGUCAAGCAUUAGCUGCUGAUAGUUGAUGUUGGCAUUCCUUCUGGACAACAGCUCCUGAUUGACGCUAGCAAGGCCGACAUGCUGGCACCUCAGCUUGAACAC .....(((((.....(((((.((..((((((..(((.....)))..))..(((....)))....))))..)).)))))(((((((.(.....).)))))))......)))))..... ( -39.00) >DroSec_CAF1 9508 117 + 1 AUCCGCAGGUACAUGGGCCAGCAUUAGCUGGUUGUAAUUAAUGUGUGAGCUUCGCUGGGAGAGCAGCUCCUGGUUAACACGCCUCAGGUUCACAUCCUCGCAGCUAAGCUUAAAAAC ...((((..((((...((((((....)))))))))).....))))(((((((.((((.(((.......(((((..........)))))........))).)))).)))))))..... ( -38.76) >DroSim_CAF1 9489 117 + 1 AUCCGCAGGUACAUGGGCCAGCAUUAGCUGGUUGUAGUUAAUGUGCGAGCUUCGCUGGGAGAGCAGCUCCUGGUUAACACGCCUCAGGUUCACAUCCUCGCAGCUAAGCUUAAAAAC ...((((.((((...(((((((....)))))))...))..)).))))(((((.((((.(((.......(((((..........)))))........))).)))).)))))....... ( -37.86) >DroEre_CAF1 9654 117 + 1 AUCCGCAGGCACAUGGGACAGCAUUAGCUGGUUGUAGUUGAUGGGCGAGCUUCGCUGGGAGAGCAGCUCCUGGUUAACUCGCCUCAGGUCCACAUGCUCGCAGCUUAGCUUAAAAAC ....((..(((..((((((..(((((((((....)))))))))((((((.((.((..((((.....))))..)).))))))))....)))).)))))..))................ ( -45.30) >DroPer_CAF1 11317 117 + 1 AUCCGCAGGCACAUGGUCAAGCAUUAGCUGCUGAUAGUUGAUGUUGGCAUUCCUUCUGGACAACAGCUCCUGAUUGACGCUAGCAAGGCCGACAUGCUGGCACCUCAGCUUGAACAC .....(((((.....(((((.((..((((((..(((.....)))..))..(((....)))....))))..)).)))))(((((((.(.....).)))))))......)))))..... ( -39.00) >consensus AUCCGCAGGCACAUGGGCCAGCAUUAGCUGGUUGUAGUUAAUGUGCGAGCUUCGCUGGGAGAGCAGCUCCUGGUUAACACGCCUCAGGUCCACAUGCUCGCAGCUAAGCUUAAAAAC ....((.((((..((((((.((((((((((....))))))))))(((((.((..(((((((.....)))))))..)))))))....))))))..)))).))................ (-28.66 = -29.30 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:23 2006