| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,186,209 – 13,186,312 |
| Length | 103 |
| Max. P | 0.592874 |
| Location | 13,186,209 – 13,186,312 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 70.35 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -12.14 |
| Energy contribution | -12.45 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13186209 103 - 22407834 ACCUUUAAGUCGUAUAUAUAUUAAAUUUACUCCUUUUUUUUUCAUCAGACAUAGACUGCUACUUCAAAGGCCAAAUGGACUUUGGUGACUCCAAGGAGCUGCA .((((..(((((.................................(((.......))).....((((((.((....)).)))))))))))..))))....... ( -16.20) >DroSec_CAF1 6664 102 - 1 ACCAUGUUGUCGUGUUUAUAUUAAAGGCACUUCUUUU-UGUUCAACAGACAUAGACUGCUACUUCAAAGGCCAAAUGGACUUUGGUGGCUCCAAGGAGCUGCA .....((.(((((((((.......)))))).....((-((.....))))....))).)).....(((((.((....)).)))))(..((((....))))..). ( -26.80) >DroSim_CAF1 6639 102 - 1 ACCAUUGAGUCGUAUUUAUAUUAAAGGUAAUUCUUUU-UGUUCAACAGACAUAGACUGCUACUUCAAAGGCCAAAUGGACUUUGGUGGCUCCAAGGAGCUGCA .......((((...........(((((....))))).-((((.....))))..)))).......(((((.((....)).)))))(..((((....))))..). ( -23.60) >DroEre_CAF1 6765 97 - 1 ACUAUUAAGUCGUAUUUAUAUUAAAUGCAUG-----U-GUUUUAUCAGACAUAGACUGCUACUUCAAAGGCCAAAUGGACUUUGGUGGCUCCAAGGAGCUGCA .......(((((((((((...))))))).((-----(-(((......)))))))))).......(((((.((....)).)))))(..((((....))))..). ( -29.60) >DroWil_CAF1 21151 81 - 1 AUGAUUGAAA----------------CUUUU------UCUGUUUGUAGACAUAGACUGCUACUUCAAAAGCCAAUUGGACUUUGCUGGUGCAAAGGAGUUGAA ........((----------------(((((------(..((((((....))))))(((.(((...((((((....)).))))...))))))))))))))... ( -16.60) >DroAna_CAF1 6137 81 - 1 -------------------AAAAACUAAAUA--UUUU-UUAUUUGCAGACAUAGACUGCUACUUUAAAGGCCACAUGGACUUUGCCGGCUCCAAGGAGCUGAA -------------------.......(((((--....-.)))))((((.......)))).....(((((.((....)).))))).((((((....)))))).. ( -18.40) >consensus ACCAUUAAGUCGUAUUUAUAUUAAAUGUAUU__UUUU_UUUUCAACAGACAUAGACUGCUACUUCAAAGGCCAAAUGGACUUUGGUGGCUCCAAGGAGCUGCA ................................................................(((((.((....)).)))))(((((((....))))))). (-12.14 = -12.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:20 2006