Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,181,587 – 13,181,680 |
Length | 93 |
Max. P | 0.556677 |
Location | 13,181,587 – 13,181,680 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -36.63 |
Consensus MFE | -26.77 |
Energy contribution | -27.97 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.92 |
Structure conservation index | 0.73 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13181587 93 + 22407834 ACAGCUGCCGCCUAAAGUGACUGUAGGCCAUUGAGCUGGUGCAGUUGCUCUCGGAGGAGCAGCGUAGUAGCGUAUAGCUCGUUUGGCUGCCCA ...((.((((((((.((...)).)))))....((((((.(((.((((((((....))))))))((....)))))))))))....))).))... ( -36.00) >DroSec_CAF1 2118 93 + 1 ACAGCUGCCGUCUGAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGCUCUCGGAGGAGCAGCGAAGUAGUGUGUAGCUCGUUUGGCUGCCCA ...((((((.(((((((..(((((((((......))..)))))))..)).))))).).))))).......((.((((((.....)))))).)) ( -39.80) >DroSim_CAF1 2108 93 + 1 ACAGCUGCCGUCUGAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGCUCUCGGAGGAGCAGCGAAGUAGUGUGUAGCUCGUUUGGCUGCCCA ...((((((.(((((((..(((((((((......))..)))))))..)).))))).).))))).......((.((((((.....)))))).)) ( -39.80) >DroEre_CAF1 2136 93 + 1 ACAGCUGCCUCCUAAAGUGACUGUAGGCUAUUGAGCUGCUGCAGUUGCUCUCGGAAGAGCAACGCAGUAGCGUGUAGCUCGUUUGGCUGCCCA .(((..((((.(..........).))))..))).((((((((.((((((((....))))))))))))))))(.((((((.....)))))).). ( -40.50) >DroYak_CAF1 2170 93 + 1 ACAGCUGCCUUCUAAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGGUCUCGGACGAGCAGCGGAGUAGCGUGUAGCUCGUUUGGCUGCCCA ((((..((........))..)))).(((((.((((((((.((.(((.(((...))).))).((......))))))))))))..)))))..... ( -32.30) >DroPer_CAF1 2428 93 + 1 AGAGCUGCCGCCGAAAGUGUGCAUAGGCCGCAGCACUGCUGCAGUUGCCAGCCGAUGUGCAGCGGAACAGAACAUAGCUCGCCUUGCCCCCAA .(((((((((((....)((..(((.(((.(((((.........)))))..))).)))..)))))).........))))))............. ( -31.40) >consensus ACAGCUGCCGCCUAAAGUGACUGUAGGCCAUUGAGCUGCUGCAGUUGCUCUCGGAGGAGCAGCGAAGUAGCGUGUAGCUCGUUUGGCUGCCCA ((((..((........))..)))).(((((.(((((((((((.((((((((....))))))))...)))))....))))))..)))))..... (-26.77 = -27.97 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:14 2006