Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,349,652 – 1,349,742 |
Length | 90 |
Max. P | 0.649973 |
Location | 1,349,652 – 1,349,742 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 83.19 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -18.17 |
Energy contribution | -18.42 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.84 |
Structure conservation index | 0.74 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1349652 90 - 22407834 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUUACACGUAUGCCCUAGUGGUGACAACGUGACUUAAGGC--CGU-AUUAUUAACUACAUG-- ........((((((((((....)))))).))))...(((((.(((((....)).).))))))).........--.((-(........)))...-- ( -21.50) >DroSec_CAF1 106146 91 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUUACACGUAUGCCCUAGUGGUGAAAACGUGAUUUAAGGC--GGU-AUUAUUAACUAUAUGU- ......((((((((((((....))))))........(((((...(((....)).)...)))))......)))--)))-................- ( -22.50) >DroSim_CAF1 110830 91 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUUACACGUAUGCCCUAGUGGUGACAGCGUGACUUAAGGC--AGU-AUAAUUAACUAUAUGU- ......((((((((((((....))))))........(((((.(((((....)).).)))))))......)))--)))-................- ( -23.70) >DroEre_CAF1 122892 77 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUAACACGUAUGCCCUAGUGGUGACAACGUGACUUAGG-----GU-AUUA---A--------- ........((((((((((....)))))).))))........((((((((..(((.((...)).)))))))-----))-))..---.--------- ( -24.60) >DroYak_CAF1 109918 92 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUAACACGUAUGCCCUAGUGGUGGCAACGUGACUUUAGUUCUAGU-AUUAUUAACCAU-UGU- .((((((.((((((((((....)))))).))))...(((((.(((((.....).)))))))))..))))))......-............-...- ( -27.80) >DroAna_CAF1 132766 85 - 1 CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAAAACACGUAUGUGCUAGUGGUGACACCAUGAU----GGU--CGUGAUUAGUA----UAUUUC .......(((((((((((....)))))).))))).......(((((((((((....)))((((..----...--))))..)))))----)))... ( -28.00) >consensus CACUAAAUUGCCGCUCAUUAUGAUGGGCUGGCAUAACACGUAUGCCCUAGUGGUGACAACGUGACUUAAGGC__AGU_AUUAUUAACUAUAUGU_ ........((((((((((....)))))).))))...(((((...(((....)).)...)))))................................ (-18.17 = -18.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:43 2006