Locus 4598

Sequence ID 2L_DroMel_CAF1
Location 13,164,003 – 13,164,123
Length 120
Max. P 0.706290
window7254

overview

Window 4

Location 13,164,003 – 13,164,123
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.11
Mean single sequence MFE -30.88
Consensus MFE -16.49
Energy contribution -15.60
Covariance contribution -0.89
Combinations/Pair 1.44
Mean z-score -2.03
Structure conservation index 0.53
SVM decision value 0.36
SVM RNA-class probability 0.706290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13164003 120 + 22407834
ACUACAAUCAGAUCCCCAAAUUCGCCGCCUCGCAUUUGGUGGCCCUCAUUUGCGAAGGGAACUUUUAGCAUGUGCGGUGCUCCUCGCUCCACAACCAGGUCCCGCUUCAUCUUCUGCUCU
........((((....(((((..((((((........))))))....))))).((((((.((((...((....))((.((.....)).))......)))).)).))))....)))).... ( -30.70)
>DroVir_CAF1 7270 120 + 1
AUCACAUACAGAUCUCCAAAUUCACCGCUGCGCAAUUGAUGGCCCUCAUUGGCAAAGGGCAUCUUCAACAUGUGCGGCAUGCCGGGCUCAAUAUCCACUGUGCGCUUCAUUUGUUGCUCA
..........((.(..(((((.....((((((((.((((..(((((.........)))))....))))..)))))))).....(.((.((........)).)).)...)))))..).)). ( -31.40)
>DroPse_CAF1 34606 120 + 1
ACAACAAUCAGAUCGCCAUAUUCGCCGCCACGCAUCUGAUGCCCCUCUUUGUUGAAGGGCACCUUCAGCAUGUGUGGAGCUCCACGCUCCACAAUCAGAUCCCGUUUCAUUUUCUCCUCC
..........((((.................(((((((((((((.((......)).)))))...)))).))))(((((((.....))))))).....))))................... ( -34.40)
>DroSec_CAF1 12797 120 + 1
ACUACAAUCAGAUCCCCAAACUCGCCGCUUCGCAUUUGGUGGCCCUCAUUUGCAAAGGGAACCUUCAGCAUGUGCGGUGCUCCUCGCUCCACAACCAGGUCCCGCUUCAUCUUCUGCUCU
........((((...........((((((........)))))).............((((.(((...((....))((.((.....)).))......))))))).........)))).... ( -28.10)
>DroAna_CAF1 4949 120 + 1
ACGACAAUUAAAUCUCCAAACUCUCCGCCACGCAUUUGAUUUCCUUCGUUGGCGAAAGGAACCUUCAGCAUGUGUGGAGCUCCACGCUCCACCACCACAUCUCGCUUCAUUUUCUGCUCA
..........................((.((((((((((.((((((((....)).))))))...)))).))))))(((((.....))))).............))............... ( -26.30)
>DroPer_CAF1 35112 120 + 1
ACAACAAUCAGAUCGCCAUAUUCGCCGCCACGCAUCUGAUGCCCCUCUUUGUUGAAGGGCACCUUCAGCAUGUGUGGAGCUCCACGCUCCACAAUCAGAUCCCGUUUCAUUUUCUCCUCC
..........((((.................(((((((((((((.((......)).)))))...)))).))))(((((((.....))))))).....))))................... ( -34.40)
>consensus
ACAACAAUCAGAUCCCCAAAUUCGCCGCCACGCAUUUGAUGGCCCUCAUUGGCGAAGGGAACCUUCAGCAUGUGCGGAGCUCCACGCUCCACAACCAGAUCCCGCUUCAUUUUCUGCUCA
...........................((((((((((((...((((.........)))).....)))).))))))))........................................... (-16.49 = -15.60 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:07 2006