Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,162,989 – 13,163,088 |
Length | 99 |
Max. P | 0.559715 |
Location | 13,162,989 – 13,163,088 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.95 |
Mean single sequence MFE | -32.46 |
Consensus MFE | -18.48 |
Energy contribution | -17.48 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.23 |
Mean z-score | -2.02 |
Structure conservation index | 0.57 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13162989 99 - 22407834 ----UUCAUCAGCGGAUGUCGUUUCGUCUGAUUGACCACCAUCUGUCUUGGUCAAAUUCAUAGGCGACCCUUUGGGCUUUGGCAUGAC-----UUGUGAUGAAUUCAA ----(((((((.((((((......))))))..............(((...((((((((((.(((....))).)))).))))))..)))-----...)))))))..... ( -27.00) >DroSec_CAF1 11726 104 - 1 ----GUCAUCAGUGGAUGUCGUUUCUUCUGAUGGACCACCAUCUGACUUGGUUAAAUUCAUAGGCGACUCUUUGGGCUUUGGCAUGAUGGCUUUGGUGAUGAAUUCAA ----.((((((.(..(.((((((...((.(((((....))))).))....((((((((((.((....))...)))).))))))..)))))))..).))))))...... ( -27.00) >DroSim_CAF1 4102 99 - 1 ----GUCAUCAGUGGAUGUCGUUUCUUCUGAUGGACCACCAUCUGACUUGGUCAAAUUCAUAGGCGACUCUUUGGGCUUUGGCAUGAC-----UGGUGAUGAAUUCAA ----((((((((((((.(((((((.....(((((....)))))((((...)))).......))))))))))....((....))...))-----)))))))........ ( -28.10) >DroEre_CAF1 4118 103 - 1 GAAGGUCAUCAGUGGAUGUCGUUUCGUCUGAUUGACCACCAUCUGACUUGGUCAAAUCCAGAGGCGACUCUUUGGAAAUUGGCUUGGU-----GGUCAAUGUGGACAA (((((.((((....)))).).))))((((((((((((((((........((((((.((((((((....))))))))..))))))))))-----))))))).))))).. ( -41.00) >DroYak_CAF1 12011 103 - 1 GAAAGUCAUCAGUGGAUGUCGAUUCGUCUGAUUGACCACCGUCUGACUUGGUCAAAUCCAGAGGCGACUCUUUGGAAUUUGGCUUGGU-----GGUCGAUGAAUUCAG (((..(((((...(((((......)))))....((((((((........(((((((((((((((....))))))).))))))))))))-----))))))))).))).. ( -39.20) >consensus ____GUCAUCAGUGGAUGUCGUUUCGUCUGAUUGACCACCAUCUGACUUGGUCAAAUUCAUAGGCGACUCUUUGGGCUUUGGCAUGAU_____UGGUGAUGAAUUCAA .....(((((((((((((..(..(((......))).)..)))))).))..((((((((((.(((....))).)))).))))))..............)))))...... (-18.48 = -17.48 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:06 2006