Locus 4596

Sequence ID 2L_DroMel_CAF1
Location 13,161,348 – 13,161,446
Length 98
Max. P 0.863911
window7252

overview

Window 2

Location 13,161,348 – 13,161,446
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 85.58
Mean single sequence MFE -41.57
Consensus MFE -32.99
Energy contribution -34.35
Covariance contribution 1.36
Combinations/Pair 1.20
Mean z-score -2.77
Structure conservation index 0.79
SVM decision value 0.84
SVM RNA-class probability 0.863911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13161348 98 + 22407834
UCAGGUGCUCAGCCGCGUGGUAAGCGAAAUCUCUCCAGGGAGGUGCGCAAGCGUCGUCUGGAGGAGAGCAUUGAAGGCCAGGGUGCGACUGGGCAAUG
.....(((((((.((((((((...(((..((((((((((..(..((....))..).)))))).))))...)))...))))...)))).)))))))... ( -44.30)
>DroSec_CAF1 10105 98 + 1
GCAGGUGCUCAGCCGCGUGGUAAGCGAAAUCUCUCCAGGGAGUUGCGCAAGCGCCGUCUGGAGGAGAGCAUUGAAGGCCAGGGUGCGACUGGGCAAUC
.....(((((((.((((((((...(((..((((((((((..((.((....))))..)))))).))))...)))...))))...)))).)))))))... ( -42.40)
>DroSim_CAF1 2481 98 + 1
GCAGGUGCUCAGCCGCGUGGUAAGCGAAAUCUGUCCAGGGAGGUGCGCAAGCGCCGUCUGGAGGAGAGCAUUGAAGGCCAGGGUGCGACUGGGCAAUC
.....(((((((.((((((((...(((..(((.((((((..(((((....))))).)))))).).))...)))...))))...)))).)))))))... ( -45.00)
>DroEre_CAF1 2476 98 + 1
UUAAGUGCUCAGACGCAGGGAAAGCGAAAUCUAUCCAGGGAGGUGCGCAAGCGUCGUCUGGAGGAGAGCAUUGAAGGCCAGGGUGCCACUGGGCAAUG
...(((((((...(((.......)))...(((.((((((..(..((....))..).))))))))))))))))...(.(((((....).)))).).... ( -38.20)
>DroYak_CAF1 10338 98 + 1
UCAGGUGCUCAGACGCGAGGUAAGCGAAAUCUCUCCAGGGAGGUGCGAAAGCGCCGUCUGGAGGAGAGCAUUGAAGGCCAGGGCGCGACUGGGCAGUC
.....(((((((.((((.(((...(((..((((((((((..(((((....))))).)))))).))))...)))...)))....)))).)))))))... ( -49.60)
>DroAna_CAF1 2130 97 + 1
CCA-GUGGCCAGAUGAAAGGUAAGCGAAAUCUUUCCAGAGAGGCGCGCAAGCGGCGAUUAGAGGAGAGUAUUGAAGUACCGAGUGCCAGUGCGCCCAG
.((-.((((...((....((((..(((...((((((.((..(.(((....))).)..))...))))))..)))...))))..)))))).))....... ( -29.90)
>consensus
UCAGGUGCUCAGACGCGUGGUAAGCGAAAUCUCUCCAGGGAGGUGCGCAAGCGCCGUCUGGAGGAGAGCAUUGAAGGCCAGGGUGCGACUGGGCAAUC
.....(((((((.((((.(((...(((...((((((.((..(((((....)))))..))...))))))..)))...)))....)))).)))))))... (-32.99 = -34.35 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:05 2006