Locus 4595

Sequence ID 2L_DroMel_CAF1
Location 13,153,720 – 13,153,815
Length 95
Max. P 0.954048
window7251

overview

Window 1

Location 13,153,720 – 13,153,815
Length 95
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 76.49
Mean single sequence MFE -27.76
Consensus MFE -8.48
Energy contribution -9.36
Covariance contribution 0.88
Combinations/Pair 1.22
Mean z-score -2.25
Structure conservation index 0.31
SVM decision value 1.44
SVM RNA-class probability 0.954048
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13153720 95 + 22407834
AAAACA-GUCUUAAAAUACAGAGCAACUUGCAG-------------GCUGCGUGCGAUUUGUACGAUAAAAAUAAGG-----GGCGAGCAA-GAGAUUCGUUUCUUGUUCCCCGA
....((-((((...........((.....))))-------------))))(((((.....)))))...........(-----((.((((((-((((....))))))))))))).. ( -27.90)
>DroPse_CAF1 20430 114 + 1
AAAAAACAUCUUUAAAUACAGAACAACA-GCAGCGGCUCGGCUUGAACUGUCUGCGAUUUGUACGAUAAAAACGAGAGCAAAGGCAGGCAGUGAAAUUCGAUUCAAGUUCUCAGA
...................(((((....-((....))(((..((..(((((((((..(((((.(...........).))))).)))))))))..))..))).....))))).... ( -27.80)
>DroSec_CAF1 2703 95 + 1
AAAACA-GUCUUAAAGUACAGAGCAACUUGCAG-------------GCUGCGUGCGAUUUGUACGAUAAAAAUAAGG-----GGCGAGUAA-GAGAUUCGUUUCUUGUUCCCCGA
....((-((((..((((........))))..))-------------))))(((((.....))))).....((((((.-----.((((((..-...))))))..))))))...... ( -27.50)
>DroYak_CAF1 2904 94 + 1
AAAACA-GUCUUAAAAUACAGAGCAACUUGCAG-------------GCUGCGUGCGAUUUGUACGAUAAAAA-AAGG-----GGCGAGCAA-GAAAUUCGUUUCUUGUUCCCCGA
....((-((((...........((.....))))-------------))))(((((.....))))).......-...(-----((.((((((-((((....))))))))))))).. ( -27.80)
>DroPer_CAF1 20571 114 + 1
AAAAAACAUCUUUAAAUACAGAACAACA-GCAGCGGCUCGGCUUGAACUGUCUGCGAUUUGUACGAUAAAAACGAGAGCAAAGGCAGGCAGUGAAAUUCGAUUCAAGUUCUCAGA
...................(((((....-((....))(((..((..(((((((((..(((((.(...........).))))).)))))))))..))..))).....))))).... ( -27.80)
>consensus
AAAACA_GUCUUAAAAUACAGAGCAACUUGCAG_____________GCUGCGUGCGAUUUGUACGAUAAAAACAAGG_____GGCGAGCAA_GAAAUUCGUUUCUUGUUCCCCGA
................((((((......(((((..............))))).....))))))...................((.((((((.((((....))))))))))))... ( -8.48 =  -9.36 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:04 2006