Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,149,566 – 13,149,675 |
Length | 109 |
Max. P | 0.558904 |
Location | 13,149,566 – 13,149,675 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 73.28 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -11.84 |
Energy contribution | -13.78 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.09 |
Mean z-score | -1.83 |
Structure conservation index | 0.52 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13149566 109 + 22407834 CCCGAAGAAUGGUCAUCCAAUUUGGGUAUCGGUCACGCGGGCAAUUUCUACCUGGCCAAAAAAUAUUUAUUUGUAUUUGUAUAUGGCUGUUU---CUUUUUUGCAGACCUUC ((((((...(((....))).))))))....((((..((((..........)).(((((..((((((......)))))).....)))))....---.......)).))))... ( -25.80) >DroPse_CAF1 14330 95 + 1 CCCGAAGAAUGGUCAUCGAAUUUGUGUAUUGGUCACGCUGACAAUUUCUACCUGGCCGCAAAAUAUUU----------GUAUAA----UUUU---UUAUUUUGCAGACCUUC ......(((.((((................(((((.(..((.....))..).)))))((((((((...----------......----....---.)))))))).))))))) ( -20.54) >DroGri_CAF1 21514 91 + 1 UCCGAAGAAUGGUCAAAG------CACGAUGGCCACUACCUCAAUUUCUACCUGGCCACAGAA-AU-----AA-----AAAUAA----UUUUUGUUUAUUGUGCAGACCUUC ......(((.((((...(------(((((((((((.................)))))((((((-((-----..-----.....)----)))))))..))))))).))))))) ( -24.83) >DroPer_CAF1 14544 95 + 1 CCCGAAGAAUGGUCAUCGAAUUUGUGUAUUGGUCACGCUGACAAUUUCUACCUGGCCGCAAAAUAUUU----------GUAUAA----UUUU---UUAUUUUGCAGACCUUC ......(((.((((................(((((.(..((.....))..).)))))((((((((...----------......----....---.)))))))).))))))) ( -20.54) >consensus CCCGAAGAAUGGUCAUCGAAUUUGUGUAUUGGUCACGCUGACAAUUUCUACCUGGCCACAAAAUAUUU__________GUAUAA____UUUU___UUAUUUUGCAGACCUUC ......(((.((((................(((((.(..((.....))..).)))))((((((((...............................)))))))).))))))) (-11.84 = -13.78 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:00 2006