Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,145,905 – 13,146,018 |
Length | 113 |
Max. P | 0.882119 |
Location | 13,145,905 – 13,146,018 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -28.13 |
Consensus MFE | -26.24 |
Energy contribution | -26.55 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.70 |
Structure conservation index | 0.93 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13145905 113 - 22407834 AG----UAGCAGGUGC---CAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAAAGAUCAAAUCGAUUUGUGGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA ..----..((((((..---...))))))..((((..((.(((((..((((((..(((((.....)))))...))))..))...)))))((((((.....)))))).....))..)))).. ( -29.60) >DroSim_CAF1 13854 120 - 1 AGUAAGUAGCAGGUGCCACCAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAAAGAUCAAAUCGAUUUGUGGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA ........((((((........))))))..((((..((.(((((..((((((..(((((.....)))))...))))..))...)))))((((((.....)))))).....))..)))).. ( -29.60) >DroEre_CAF1 15017 112 - 1 AA----UAGCAGGUGC---CGUGCCUGCGAAUAAGCCAAGACUAGUAGUCGCAAAGAUCAAAUCGAU-UGUGGUGGGCCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA ..----..((((((..---...))))))......((((.(((.....))).....((((.....)))-).)))).((((.....))))((((((.....))))))............... ( -27.10) >DroYak_CAF1 13353 113 - 1 AC----CAACAGGUGC---CAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAGAGAUCAAAUCGAUUUGUUGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA ..----...(((((..---...)))))...((((..((.(((((..(((((((((((((.....))))).))))))..))...)))))((((((.....)))))).....))..)))).. ( -26.20) >consensus AG____UAGCAGGUGC___CAUGCCUGCAAAUAAGCCAAGACCAGUAGUCGCAAAGAUCAAAUCGAUUUGUGGUGGACCUUGAUGGUCAAAAGAGCUAAUCUUUUAAAUAUGAAUUAUAA ........((((((........))))))..((((..((.(((((..((((((..(((((.....)))))...))))..))...)))))((((((.....)))))).....))..)))).. (-26.24 = -26.55 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:59 2006