Locus 4587

Sequence ID 2L_DroMel_CAF1
Location 13,141,317 – 13,141,436
Length 119
Max. P 0.534152
window7235

overview

Window 5

Location 13,141,317 – 13,141,436
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.54
Mean single sequence MFE -25.00
Consensus MFE -20.46
Energy contribution -20.10
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.35
Structure conservation index 0.82
SVM decision value 0.00
SVM RNA-class probability 0.534152
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13141317 119 - 22407834
AGGAUGUAAAUUUCCAAA-AGGGGAAAAAUCAUGGAAAGCUCGCACGACGAGUUGCGCGGUAAAUAGAAUGUGGUAAUAAUGCCAUUAAAACUGUAGUACGUAAUGAUGUACGUGAAAUA
...(((((..(((((...-...))))).(((((....((((((.....))))))..(((....((((...((((((....)))))).....))))....))).))))).)))))...... ( -25.70)
>DroSec_CAF1 8395 116 - 1
AGGAUGUAAAUUUCCGAAAAGGGGA--AAUCAUGGAAAGCUCGCACGACGAGUC--GCGGUAAAUAGUAUGUGGUUAUAAUGCCAUUAAAACUGAAGUACGUAAUGAUGUACGUGAAAUA
...(((((..(..((.....))..)--.(((((.....(((((.....))))).--(((.....((((..(((((......)))))....)))).....))).))))).)))))...... ( -24.30)
>DroSim_CAF1 9197 118 - 1
AGGAUGUAAAUUUCCGAAAAGGAGAAAAAUCAUGGAAAGCUCGCACGACGAGUC--GCGCUAAAUAGAAUGUGGUUAUAAUGCCAUUAAAACUGAAGUACGUAAUGAUGUACGUGAAAUA
..(((.....(((((.....)))))...)))........((((.....))))((--((......(((...(((((......))))).....)))..((((((....)))))))))).... ( -23.70)
>DroEre_CAF1 10514 116 - 1
AGGAUGUACAUUUCCAAA-GGG-GAAAAAUCAUGGAAAACUCGCACGACGCGUC--GCGGUAUACAGAAUGUGGUAAUAAUGCCAUUAAAACUGGAGGGCGCUAUGAUGAACGUGAAAUA
...((((.(.(((((...-..)-)))).(((((((....((((((((...))).--))......(((...((((((....)))))).....))))))....)))))))).))))...... ( -27.60)
>DroYak_CAF1 8505 117 - 1
AGGAUGUAAAUUUCCAAA-GGGUGGAAAAUCAUGGAAAACUCGCACGACGAGUC--GCGGUAAAUAGAAUGUGGUAAUAAUGCCAUUAAAACUGGAGAACGUAAUGAUAAACGUGAAAUA
..........((((((..-...)))))).(((((....(((((.....))))).--(((.....(((...((((((....)))))).....))).....))).........))))).... ( -23.70)
>consensus
AGGAUGUAAAUUUCCAAA_AGGGGAAAAAUCAUGGAAAGCUCGCACGACGAGUC__GCGGUAAAUAGAAUGUGGUAAUAAUGCCAUUAAAACUGAAGUACGUAAUGAUGUACGUGAAAUA
.(((........)))..............(((((....(((((.....)))))...(((.....(((...(((((......))))).....))).....))).........))))).... (-20.46 = -20.10 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:49 2006