Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,140,578 – 13,140,684 |
Length | 106 |
Max. P | 0.866346 |
Location | 13,140,578 – 13,140,684 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.91 |
Mean single sequence MFE | -24.69 |
Consensus MFE | -15.22 |
Energy contribution | -16.75 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.21 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13140578 106 + 22407834 --GACUUAUUUUUUGUUAUCAGCAAAGUAUUUGGCACA-GAGCCA-GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCGAGUAAACAAAAGUCUGAUA---------- --(((((.....(((((((..((........((((...-..))))-(..(((((((.(((.........))).)))))))..).....))..)).)))))))))).....---------- ( -23.00) >DroSec_CAF1 7693 89 + 1 -------------UAUUAUCAGCAAAGUAUUUGGCACA--------GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAACCGAGUAAACAAAAGGCUGAUA---------- -------------...(((((((....(((((((....--------(..(((((((.(((.........))).)))))))..).....)))))))........)))))))---------- ( -23.40) >DroSim_CAF1 8488 96 + 1 -------------UAUUAUCAGCAAAGUAUUUGGCACA-CUGCCAUGUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCGAGUAAACAAAAGGCUGAUA---------- -------------...(((((((...((((.((((...-..)))).))))..........((((((......(((((...)))))...)))))).........)))))))---------- ( -25.40) >DroEre_CAF1 9764 108 + 1 UCGCCUCCACUUUUGUUAUCAGUAAAGUAUUUGGCACA-CAGCCA-GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCAAGUAAACAAAAGGCUGAUA---------- ..((((.....(((((((((...........((((...-..))))-(..(((((((.(((.........))).)))))))..)))).))))))........)))).....---------- ( -24.52) >DroYak_CAF1 7722 106 + 1 --GCCUCCACUUUUGUUAUCAGCAAAGUAUUUGGCACA-GAGCCA-GUAUAUCUCGUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCAAGUAAACAAAAGGCUGAUA---------- --((((.....((((((((..((...(((((.(((...-..))))-))))((((((((.....))).)))))(((((...)))))...))..)).)))))))))).....---------- ( -25.00) >DroAna_CAF1 8012 115 + 1 GUGUUUUCACUUUUGUUAUCUGCGAAAUAUUUGUCACAAGCGCCG-CGAUAUCUUAUAUCAUUUGCAGAGAUUUCAGAUAUCAGAUAGCC----AAACAAAAGGCUAAGCACAAAACUGG ((((((...((((((((.((((((((.............((...)-)(((((...))))).))))))))(((.......)))........----.))))))))...))))))........ ( -26.80) >consensus __G_CU_CACUUUUGUUAUCAGCAAAGUAUUUGGCACA_GAGCCA_GUAUAUCUCAUAUCAUUUGCAGAGAUUUGGGAUACCCGAUAAGCGAGUAAACAAAAGGCUGAUA__________ ................(((((((...((((.((((......)))).))))((((((.(((.........))).))))))........................))))))).......... (-15.22 = -16.75 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:48 2006