Locus 4585

Sequence ID 2L_DroMel_CAF1
Location 13,140,144 – 13,140,252
Length 108
Max. P 0.937382
window7233

overview

Window 3

Location 13,140,144 – 13,140,252
Length 108
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -29.85
Consensus MFE -20.92
Energy contribution -21.64
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -2.14
Structure conservation index 0.70
SVM decision value 1.26
SVM RNA-class probability 0.937382
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13140144 108 + 22407834
UGCUCGAAUGUGGUAAUUAAUUGUGGCCAGCAAUCGAUGGCAGAAUCCCCCAGCCACGGGGGUUAAUGCCAUUCAAAAGAAUCGAACCCCCAAGAUCAGUAAAUUACU-------
((((.((..(((((...........((((........))))...........)))))(((((((......((((....))))..)))))))....)))))).......------- ( -29.75)
>DroSec_CAF1 7427 115 + 1
UACUCGAAUGUGGUAAUUAAUUGUGGCCAAAAAUCGAUGGCAGAAUCCCCCAGCCACGGGGGUUAAUGCCAUUCAAAAGAAUCGAACACCCAAGAUCAGUAAAUUACCUCAAGAU
........((.(((((((.(((((((.......(((((((((....(((((......)))))....)))))(((....)))))))....)))....)))).))))))).)).... ( -33.60)
>DroSim_CAF1 8204 115 + 1
UGCUCGAAUGUGGUAAUUAAUUGUGGCCAACAAUCGAUGGCAGAAUCCCCCAGCCACGGGGGUUAAUGCCAUUCAAAAGAAUCGAACCCCCAAGAUCAGUAAAUUACCUCAAGAU
........((.(((((((.(((((((.......(((((((((....(((((......)))))....)))))(((....)))))))....)))....)))).))))))).)).... ( -33.60)
>DroEre_CAF1 9368 114 + 1
UGCUCGAAUGUGGUAAUUAAUUGUGGCCAGCAAUCGAUGGCAGAAUC-CCCAGCCACGAGGGUUAAUGCCAUUCAAAGGUAUCGAAGCCCCAAGACCAGUAAAUUACCUCAAGAC
........((.(((((((.((((.(........(((.((((......-....)))))))(((((.(((((.......)))))...))))).....))))).))))))).)).... ( -29.50)
>DroAna_CAF1 7653 88 + 1
UGCUCGAAUGUGGUAAUUAAUUGUGGCCAGCAACCGAUGGCAAAAUAUUCCCAACCCAGGGGGUAUUGCCAUUAAAAAGAAUCAAACG---------------------------
.....((.((((((.((.....)).)))).))...(((((((..((((((((......)))))))))))))))........)).....--------------------------- ( -22.80)
>consensus
UGCUCGAAUGUGGUAAUUAAUUGUGGCCAGCAAUCGAUGGCAGAAUCCCCCAGCCACGGGGGUUAAUGCCAUUCAAAAGAAUCGAACCCCCAAGAUCAGUAAAUUACCUCAAGA_
...((((...((((.((.....)).))))......(((((((....(((((......)))))....)))))))........)))).............................. (-20.92 = -21.64 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:47 2006