Locus 4584

Sequence ID 2L_DroMel_CAF1
Location 13,138,795 – 13,138,891
Length 96
Max. P 0.687298
window7232

overview

Window 2

Location 13,138,795 – 13,138,891
Length 96
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 73.69
Mean single sequence MFE -17.98
Consensus MFE -9.32
Energy contribution -9.36
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.52
SVM decision value 0.32
SVM RNA-class probability 0.687298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13138795 96 - 22407834
CGGCGCCUUCUUCU------CCAGGGGGCAAAAAGUCAAACU---GCCUUGUACCG---CCCCUCCAUAUUCC-CCUCAUUAUCAUCUCAUAUUUGCCCCGCCACUUCU
.(((((((......------..)))(((((((.((.....))---((........)---).............-..................)))))))))))...... ( -17.70)
>DroSec_CAF1 6092 97 - 1
CGGCGCCUUCUUCU------CCAGGGGGCAAAAAGUCAAACU---GCCUUGUUCAAA-ACCCCCACAUAUUCC-CC-CAUAAUCAACUCAUAUUUGCCCCGCCACUUCU
.(((((((......------..)))(((((((......(((.---.....)))....-.........(((...-..-.)))...........)))))))))))...... ( -16.60)
>DroSim_CAF1 6856 98 - 1
CGGCGCCUUCUUCU------CCAGGGGGCAAAAAGUCAAACU---GCCUUGCACCGCUCCCCCCACAUAUUCC-UC-CAUUAUCAACUCAUAUUUGCGCCGCCACUUCU
((((((........------...(((((......(((((...---...))).)).....))))).........-..-...(((......)))...))))))........ ( -19.80)
>DroYak_CAF1 6049 94 - 1
CGGCGCCUUCUUCU------CCCGAGGGCAAAAAGUCAACCU---GCCUUGCCCCG---C-CCCCCAUAUUGC-CC-CAUUAUCAUUCCAUAUUUGCCUCCGCAGUUCU
.((((.........------..((.((((((..((.....))---...))))))))---.-.........)))-).-................((((....)))).... ( -16.20)
>DroAna_CAF1 6224 92 - 1
CGACGCCUUCUUCAACAUCACUCGGGGGCAAAGAGUCAAACCCCCGCCAUG----------CCGGAAUGUUUCUUC-CAUUAUCUGUUGAUAUUUUUCU------UUUU
...........((((((.....((((((............)))))).....----------..((((......)))-)......)))))).........------.... ( -19.60)
>consensus
CGGCGCCUUCUUCU______CCAGGGGGCAAAAAGUCAAACU___GCCUUGCACCG___CCCCCACAUAUUCC_CC_CAUUAUCAACUCAUAUUUGCCCCGCCACUUCU
.(((((((((.............)))))).....(.....)....)))............................................................. ( -9.32 =  -9.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:46 2006