Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,128,746 – 13,128,860 |
Length | 114 |
Max. P | 0.736416 |
Location | 13,128,746 – 13,128,860 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -18.88 |
Energy contribution | -20.28 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.67 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13128746 114 + 22407834 CUAAUCACUGCCCUUCGCCCAAAUUGCAGCAGCGUCAUUUCAGCGCUGGGUUGCCAAUUGACGUGGCGGCAAGCAACCUCUAUUGCAUAACACCUGACAAAUGCAAUUCAGGCA ................(((..(((((((.((((((.......)))))).(((((((.......)))))))..((((......))))...............)))))))..))). ( -33.90) >DroSec_CAF1 21683 110 + 1 CUAUUCACUGCCCUUCGCCCAAAUUACAGCAGCAUCAUUGCA----UGGGUUGCCAAUUGACGCAACGGCAAGCAAGCUCUAUUGCAUAACACCUGACAAAUGCAAUUCAGGCA ........((((...................(((....))).----...(((((........))))))))).....(((..(((((((............)))))))...))). ( -23.10) >DroSim_CAF1 22767 114 + 1 CUAAUCACUGCCCUUCGCCCAAAUUGCAGCAGCAUCAUUUCAGCGCUGGGUUGCCAAUUGAAGCGGCGGCAAGCAAACUCUAUUGCAUAACACCUGACAAAUGCAAUUCAGGCA ................(((..(((((((((.((.........)))))((((((((.........))))))..((((......))))......))........))))))..))). ( -28.60) >DroEre_CAF1 23425 98 + 1 CAAAUCACUGCCCUUCGCCCAAGUUGCACCAUC---GC-------------UGCCAAUUGACGUGGCAGCCACCAAGCUCUAUUGCAUAACACCUGACAAAUGCAAUUCAGGCA ................(((..(((((((.....---((-------------(((((.......)))))))......((......))...............)))))))..))). ( -27.20) >DroYak_CAF1 22469 111 + 1 CAAAUCACUGCCCUUCGCCCACAUUGCACCAUU---GCAUCAACGCUGGGUUGCCAAUUGACGUGGCAGCCAGCAACCUCUAUUGCAUAACACCUGACAAAUGCAAUUCAGGCA ................(((.....((((....)---))).....(((((.((((((.......))))))))))).......(((((((............)))))))...))). ( -29.00) >consensus CUAAUCACUGCCCUUCGCCCAAAUUGCAGCAGC_UCAUUUCA_CGCUGGGUUGCCAAUUGACGUGGCGGCAAGCAACCUCUAUUGCAUAACACCUGACAAAUGCAAUUCAGGCA ................(((..(((((((.....................(((((((.......)))))))..((((......))))...............)))))))..))). (-18.88 = -20.28 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:36 2006