Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,341,399 – 1,341,519 |
Length | 120 |
Max. P | 0.937771 |
Location | 1,341,399 – 1,341,519 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -28.49 |
Energy contribution | -28.60 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.31 |
Structure conservation index | 0.95 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1341399 120 - 22407834 ACGAUAUCAUUGUGGAAAAGCUUCCUAUAAGUCAUGUUAAUACGCAAGUAACAAAAGUUCUUCCAGUUCCCCAUGGGGACUAUCUAUUUCACUCGAACUGGUAUGCCUACGAUAUUAACC ..((((((.((((((((....))))...............(((....)))))))..((....(((((((((....)))).........((....)))))))...))....)))))).... ( -25.00) >DroSec_CAF1 98776 120 - 1 ACGAUAUCAUUGUGGAAAAGGUUUCUAUAAGUCAUCUUAAUACGCAAGUAACAGACGUUCUUCCAGUUCCCCAUGGGGACUACCUAUUUCACUCGAACUGGUAUGCCUACGAUAUCAUCC ..((((((...((((((.((((.(((.((((....)))).(((....)))..))).........(((((((...))))))))))).)))))).......((....))...)))))).... ( -32.70) >DroSim_CAF1 102733 120 - 1 ACGAUAUCAUUGUGGAAAAGGUUUCUAUAAGUCAUCUUAAUACGCAAGUAACAGACGUUCUUCCAGUUCCCCAUGGGGACUACCUAUUUCACUCGAACUGGUAUGCCUACGAUAUCAAGC ..((((((...((((((.((((.(((.((((....)))).(((....)))..))).........(((((((...))))))))))).)))))).......((....))...)))))).... ( -32.70) >consensus ACGAUAUCAUUGUGGAAAAGGUUUCUAUAAGUCAUCUUAAUACGCAAGUAACAGACGUUCUUCCAGUUCCCCAUGGGGACUACCUAUUUCACUCGAACUGGUAUGCCUACGAUAUCAACC ..((((((...((((((.((((..................(((....)))..............(((((((...))))))))))).)))))).......((....))...)))))).... (-28.49 = -28.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:40 2006