Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,123,893 – 13,124,004 |
Length | 111 |
Max. P | 0.940317 |
Location | 13,123,893 – 13,124,004 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -26.66 |
Energy contribution | -25.86 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.28 |
Mean z-score | -2.25 |
Structure conservation index | 0.77 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13123893 111 - 22407834 UUGUCUGGCACUCUAUUUUCCUCUUUUUGGGGUAUGGAAACUUACCCAUCAAGGAUGGUAGAUGGUAGAGGCCACUUAAGGCUUAUCAAUCUGGGGGAUCGAUGAGGUAGG (((..((((.(((((((..(((((((...(((((.(....).)))))...))))).)).....)))))))))))..)))..((((((.(((.....))).))))))..... ( -38.70) >DroSec_CAF1 16902 103 - 1 UUGUCUGACACUCUAUUUUCCCCU-UUUGGGGUAUGGAAACUUAACCAUCAAGGAUGGUAGAU-------GCCACUUAAGGCUUAUCAUUCCAAGGGAUCGAUGAGGUAGG ..((((.....(((((...((((.-...)))).)))))......((((((...))))))))))-------(((......)))(((((((((....)))).)))))...... ( -29.00) >DroSim_CAF1 17998 103 - 1 UUGUCUGGCACUCUAUUUUCCCCU-UUUGGGGUAUGGAAACUUACCCAUCAAGGAUGGUAGAU-------GCCACUUAAGGCUUAUCAUUCUGAGGGAUCGAUGAGGUAGG ...........(((((...((((.-...)))).)))))..((((((((((.((((((((((..-------(((......)))))))))))))((....)))))).)))))) ( -36.30) >DroEre_CAF1 18518 101 - 1 UUGUCUGCCACUCUAUUUUGCCCC-UUUCGGGCAUGGCAACUUGCCUAUCAAGGAUGGAGGCG-------GCCACUUAAGGCUUAUCAUUC-GAGGCAUCGAUGAGGU-AG ....(((((.(((((((((((((.-....))))..(((.....))).....)))))))))..(-------(((......))))..((((.(-((....))))))))))-)) ( -35.70) >DroYak_CAF1 17333 103 - 1 UUGUCUGGCACUCUAUUUUCUCCU-UUUCGGGCAUGGAAACUUGCCUAUCAAGGAUGCUAGAU-------GCCACUUAAGGCUUAUCAUUCUGAGGGAUCGAUGAGGUUGG (((..(((((.((((.....((((-(...(((((.(....).)))))...)))))...)))))-------))))..)))..((((((((((....)))).))))))..... ( -32.80) >consensus UUGUCUGGCACUCUAUUUUCCCCU_UUUGGGGUAUGGAAACUUACCCAUCAAGGAUGGUAGAU_______GCCACUUAAGGCUUAUCAUUCUGAGGGAUCGAUGAGGUAGG ....((.((.(((.....((((.......(((((.(....).))))).....(((((((((.........(((......))))))))))))...)))).....))))).)) (-26.66 = -25.86 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:28 2006