Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,122,120 – 13,122,210 |
Length | 90 |
Max. P | 0.529862 |
Location | 13,122,120 – 13,122,210 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.21 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -18.12 |
Energy contribution | -18.52 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.72 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13122120 90 - 22407834 GGACAGGCAAAUGGCUAAAACAGCGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU------UUUAGACA ....((((....(((((((...((....))......((((((...((((.......))))...)))))))))))))...)))------)....... ( -20.60) >DroSec_CAF1 15090 90 - 1 GGACAGGCAAAUGGCUAAAACAACGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU------UUAAGCCA .....(((....((((((......(((.((....))((((((...((((.......))))...))))))....)))))))))------....))). ( -23.60) >DroSim_CAF1 16295 90 - 1 GGACAGGCAAAUGGCUAAAACAACGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU------UUAAGCCA .....(((....((((((......(((.((....))((((((...((((.......))))...))))))....)))))))))------....))). ( -23.60) >DroEre_CAF1 16728 87 - 1 GGACAGGCAAAUGGCUAAAGCAACGGCGGCAA-CGCGCAGU-UGCCAGUAGAUCAAAUUGAAUAACUGCUUCAGCUUUAGCU------UUUCGCC- .....(((.((.(((((((((....(((....-)))(((((-((.((((.......))))..)))))))....)))))))))------.)).)))- ( -34.10) >DroYak_CAF1 15397 96 - 1 GGACAGGCAAAUGGCUAAAACAACGGCAGCAACCGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCUUCAGCUUUAAGCCA .....(((....(((((((....(((......))).((((((...((((.......))))...)))))))))))))..(((....)))....))). ( -24.80) >consensus GGACAGGCAAAUGGCUAAAACAACGGCAGCAACAGCGCAGUUUGCCAGUAGAUCAAAUUGAAUAACUGCUUUAGCUUUAGCU______UUAAGCCA .....(((....(((((((.........((....))((((((...((((.......))))...)))))))))))))...))).............. (-18.12 = -18.52 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:27 2006