| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,115,470 – 13,115,565 |
| Length | 95 |
| Max. P | 0.760203 |
| Location | 13,115,470 – 13,115,565 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 87.19 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -19.65 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13115470 95 + 22407834 ACCGCAAUCUACGCCACUUUGGUCAGUAAUCACCGUCGCGAUUAUCAUUGGCAUAAUCAUCGACGUUUCAAACAUUUUGCGGCUCUCGAAGGCCC ...((((..((((((.....)))..))).....(((((.(((((((....).))))))..)))))...........))))((((......)))). ( -20.70) >DroSim_CAF1 8632 85 + 1 GCCGCAAUCUGCGCCACUUUGGUCAGUAAUCAGCGUCGCGAUUAUCAUUGGCAUAAUCAUCGACGUUUCAAACAUUUUGCGG----------CCC (((((((.(((.(((.....)))))).....(((((((.(((((((....).))))))..))))))).........))))))----------).. ( -28.00) >DroEre_CAF1 10450 95 + 1 GCCGCAAUCUGCGCCACUUUGGUCAGUAAUCAGCGUCGCGAUUAUCAUUGGCAUAAUCAUCGACGUUUCAAACAUUUUGCGGCUCUCGAAGACCU (((((((.(((.(((.....)))))).....(((((((.(((((((....).))))))..))))))).........)))))))............ ( -28.40) >DroYak_CAF1 8729 95 + 1 GCCGCCAAUUGCGCCACGUUGGUCGGCAAUCAACGUCGCGAUUAUCAUUGGCAUAAUCAUGGACGAUUCAAACUUUUUGCGGCUCUCGAAGACCC (((((((((..(((.((((((((.....)))))))).)))......))))))..((((......))))............)))............ ( -26.50) >consensus GCCGCAAUCUGCGCCACUUUGGUCAGUAAUCAGCGUCGCGAUUAUCAUUGGCAUAAUCAUCGACGUUUCAAACAUUUUGCGGCUCUCGAAGACCC (((((((..((((((.....)))..))).....(((((.(((((((....).))))))..)))))...........)))))))............ (-19.65 = -20.27 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:19 2006