Locus 457

Sequence ID 2L_DroMel_CAF1
Location 1,340,446 – 1,340,536
Length 90
Max. P 0.549836
window737

overview

Window 7

Location 1,340,446 – 1,340,536
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 88.15
Mean single sequence MFE -17.38
Consensus MFE -11.81
Energy contribution -12.00
Covariance contribution 0.19
Combinations/Pair 1.12
Mean z-score -1.67
Structure conservation index 0.68
SVM decision value 0.03
SVM RNA-class probability 0.549836
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1340446 90 - 22407834
UUACCUCCUUCUCAGCCGCAAUUACAGCAACGGCAACAGCAAC-UCGAAAGGAAAACCCAGUGGCAACAACAAUAGCUAAAAGGAACAAUG
.....(((((....((((............))))...(((...-((....)).........((....))......)))..)))))...... ( -16.50)
>DroSec_CAF1 97807 89 - 1
UUACCUCCUUCUCAGCCGCAAUUACAGCAACGGCAACAGCAAC-UCGAAAGGAAAACCCAGUGGCAACAACAAUAGCGA-AAGGAACAAUG
.....(((((.((.((((............))))....((...-((....)).........((....))......))))-)))))...... ( -17.40)
>DroSim_CAF1 101760 89 - 1
UUACCUCCUUCUCAGCCGCAAUUACAGCAACGGCAACAGCAAC-UCGAAAGGAAAACCCAGUGGCAACAACAAUAGCGA-AAGGAACAAUG
.....(((((.((.((((............))))....((...-((....)).........((....))......))))-)))))...... ( -17.40)
>DroEre_CAF1 110988 76 - 1
--ACCUCCUUUUCAGCCGCAAUUACAGCAAC------------AGCGAAAGGAAAACCCAGUGGCAACAACAAUAGCUG-GAGGAACAAUG
--.(((((......(((((.......((...------------.))....((.....)).))))).....(....)..)-))))....... ( -18.20)
>consensus
UUACCUCCUUCUCAGCCGCAAUUACAGCAACGGCAACAGCAAC_UCGAAAGGAAAACCCAGUGGCAACAACAAUAGCGA_AAGGAACAAUG
.....(((((.((.(((((............(....).............((.....)).))))).....(....).)).)))))...... (-11.81 = -12.00 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:39 2006