Locus 4569

Sequence ID 2L_DroMel_CAF1
Location 13,112,100 – 13,112,194
Length 94
Max. P 0.616462
window7198

overview

Window 8

Location 13,112,100 – 13,112,194
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 90.85
Mean single sequence MFE -20.18
Consensus MFE -16.32
Energy contribution -17.04
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.81
SVM decision value 0.17
SVM RNA-class probability 0.616462
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13112100 94 - 22407834
AAUGAAAUAAUCGAGCUUAAAUAUUUUGCGGUUGGACUAUAUUUCUUUCAUCCGCUUGGCAGAAACCGGAUAAGCAAAAUAUUUGAUUUCCUCU
............(((.(((((((((((((((..(((......)))..))(((((.((......)).)))))..))))))))))))).))).... ( -22.00)
>DroSec_CAF1 5167 94 - 1
AAUGAAAUAAUCGAGCUUAAAUAUUUUGUGGUUGGACUAUAUUUCUCGCAUCCGCUUGGCAGAAACCGGAAAAGCAAAAUAUUUGAUUUCCUCU
............(((.(((((((((((((.((.(((.......))).)).((((.((......)).))))...))))))))))))).))).... ( -19.00)
>DroSim_CAF1 5280 94 - 1
AAUGAAAUAAUCGAGCUUAAAUAUUUUGUGGUUGGACUAUAUUUCUCGCAUCCGCUUGGCAGAAACCGGAAAAGCAAAAUAUUUGAUUUCCUCU
............(((.(((((((((((((.((.(((.......))).)).((((.((......)).))))...))))))))))))).))).... ( -19.00)
>DroEre_CAF1 7223 94 - 1
CAUGAAAUAAUAGAGCUUAAAUAUUUUGUGGCUAGAAUAUAUUUCUCUCAACAGUUCGGCAGAAACCGGAAAAGCAAAAUAUUUGAUUUCCUCU
............(((.(((((((((((((.(..((((.....))))..).....(((((......)))))...))))))))))))).))).... ( -18.80)
>DroYak_CAF1 5393 94 - 1
AAUGAAAUAACAGAGCUUAAAUAUUUUGUGGUUGGACGUUAGUUCGCUCAAUCGCUUGGCAGAGACCGGAAAAGCAAAAUAUUUGAUUUCCUCU
...........((((.((((((((((((((((((..((......))..)))))..((((......))))....)))))))))))))....)))) ( -22.10)
>consensus
AAUGAAAUAAUCGAGCUUAAAUAUUUUGUGGUUGGACUAUAUUUCUCUCAUCCGCUUGGCAGAAACCGGAAAAGCAAAAUAUUUGAUUUCCUCU
............(((.(((((((((((((..((((......(((((.(((......))).)))))))))....))))))))))))).))).... (-16.32 = -17.04 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:14 2006