Locus 4568

Sequence ID 2L_DroMel_CAF1
Location 13,102,515 – 13,102,607
Length 92
Max. P 0.770917
window7197

overview

Window 7

Location 13,102,515 – 13,102,607
Length 92
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.76
Mean single sequence MFE -16.71
Consensus MFE -13.74
Energy contribution -13.42
Covariance contribution -0.32
Combinations/Pair 1.13
Mean z-score -1.56
Structure conservation index 0.82
SVM decision value 0.53
SVM RNA-class probability 0.770917
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13102515 92 + 22407834
------GC----ACAUAUACGCCUAUAUAAAAGGCCAGCGCAGCGAGUGAAAUAAAGUUAAAAGACUUUUAACCAAAUUCAAGGUCAACUUCGUUUCAAUAA
------((----........((((.......)))).......))...(((((..(((((....((((((.((.....)).)))))))))))..))))).... ( -15.86)
>DroSec_CAF1 83828 98 + 1
ACAAGCGC----ACAUAUACGCCUAUAUAAAAGGCCAGCGCAGCGAGCGAAAUAAAGUUAAAAGACUUUUAACCAAAUUCAAGGUCAACUUCGUUUCAAUAA
....((((----........((((.......))))..)))).......((((..(((((....((((((.((.....)).)))))))))))..))))..... ( -19.20)
>DroSim_CAF1 81723 98 + 1
ACAAGCGC----ACAUAUACGCCUAUAUAAAAGGCCAGCGCAGCGAGCGAAAUAAAGUUAAAAGACUUUUAACCAAAUUCAAGGUCAACUUCGUUUCAAUAA
....((((----........((((.......))))..)))).......((((..(((((....((((((.((.....)).)))))))))))..))))..... ( -19.20)
>DroEre_CAF1 84728 98 + 1
AAAAAAGC----ACAUAUACGCCUAUAUAAAAGGCCAGCGCAGCCAGCGAAAUAAAGUUAAAAGACUUUUAACCAAAUUCAAGGUCAACUUCGUUUCAAUAA
......((----..(((((....)))))....(((.......))).))((((..(((((....((((((.((.....)).)))))))))))..))))..... ( -16.40)
>DroAna_CAF1 68733 102 + 1
ACAUGCAUACCGUCAUAUAUAUCCAUAUAAAAAGUCAGCGCAGAGAGUGAAAUAAAGUUAAAAGACUUUUAACCAAAUUCAAGGUCAACUUCGUUUCAAUAA
...(((.........(((((....)))))....(....)))).....(((((..(((((....((((((.((.....)).)))))))))))..))))).... ( -12.90)
>consensus
ACAAGCGC____ACAUAUACGCCUAUAUAAAAGGCCAGCGCAGCGAGCGAAAUAAAGUUAAAAGACUUUUAACCAAAUUCAAGGUCAACUUCGUUUCAAUAA
....................((((.......))))..((.......))((((..(((((....((((((.((.....)).)))))))))))..))))..... (-13.74 = -13.42 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:13 2006