Locus 4567

Sequence ID 2L_DroMel_CAF1
Location 13,096,953 – 13,097,072
Length 119
Max. P 0.631129
window7196

overview

Window 6

Location 13,096,953 – 13,097,072
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 89.36
Mean single sequence MFE -17.67
Consensus MFE -13.95
Energy contribution -14.14
Covariance contribution 0.19
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.20
SVM RNA-class probability 0.631129
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13096953 119 + 22407834
UCCUUAAAUCAAACGCAUAAUCUGUCAAAUAUAAACCACUUGGCGUUCUUGUUCAUCCAUUAACAGUUGCCUACAACUUUGACAUAAUGUUCAAGGACAAAUUUCUACAUACAUCCAUU
.......................(((((...........)))))(((((((..(((...((((.(((((....)))))))))....)))..)))))))..................... ( -17.40)
>DroSec_CAF1 78076 119 + 1
UCCUAAAAUCAAACGCAUAAUCUGUCAAAUAUAAACAUCUUGGCGUUCUUGUUCAUCCAUUAACAGUUGUCUACAAUUUUGAACUAAUGUUCAAGGACAAAUUUCUACACACAGCCAUU
..............((.......(((((...........)))))(((((((..(((...((((.(((((....)))))))))....)))..)))))))...............)).... ( -17.70)
>DroSim_CAF1 75938 119 + 1
UCCGAAAAUCAGACCCAUAAUCUGUCAAAUAUAAACAUCUUGGCGUUCUUGUUCAUCCAUUAACAGUUGUCUACAACUUUGACAUAAUGUUCAAGGACAAAUUUCUACACACAGCCAUU
...((((................(((((...........)))))(((((((..(((...((((.(((((....)))))))))....)))..)))))))...)))).............. ( -19.90)
>DroYak_CAF1 78913 119 + 1
UCCCAAAAUCAAAGUCAUAAUCUGUCCAAUAUAAAGAUCUUCAUGCUCUUGUUCAUCCACUACCAGUUGUCUACAACUUUGACAUAAUGUUCAAGGACAAAUUUCCACACGCAGGCAUU
.............(((...((((...........)))).....((..((((..(((........(((((....)))))........)))..))))..))..............)))... ( -15.69)
>consensus
UCCUAAAAUCAAACGCAUAAUCUGUCAAAUAUAAACAUCUUGGCGUUCUUGUUCAUCCAUUAACAGUUGUCUACAACUUUGACAUAAUGUUCAAGGACAAAUUUCUACACACAGCCAUU
.......................(((((...........)))))(((((((..(((........(((((....)))))........)))..)))))))..................... (-13.95 = -14.14 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:12 2006