Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,091,387 – 13,091,480 |
Length | 93 |
Max. P | 0.512535 |
Location | 13,091,387 – 13,091,480 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 89.43 |
Mean single sequence MFE | -21.38 |
Consensus MFE | -17.70 |
Energy contribution | -17.98 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.32 |
Structure conservation index | 0.83 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13091387 93 - 22407834 CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUG---GUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUCUAAUUUCGCUAAGC .(((....(((....))).....(((((.....(((((((---((((((.......))).))).)))))))....))))).........))).... ( -20.40) >DroSec_CAF1 72648 91 - 1 CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUGGCGGUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUGUAAUUUUAC----- .(((((.......)))))..((.(((((.....(((((((...((((((.......))).))).)))))))....))))).))........----- ( -22.40) >DroSim_CAF1 70293 91 - 1 CGGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUGGUGGUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUGUAAUUUCAC----- .(((((.......)))))..((.(((((.....((((((((((((.(((....))).)).))).)))))))....))))).))........----- ( -23.80) >DroEre_CAF1 73794 93 - 1 CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUG---GUGGCUAAUAAGCAUCACACAUGCUGCGGCAGGUUUUUGUAAUUUCUCUGAGG .(((((.......)))))........((((((((...(((---(((.((....))))))))...(((....))).))))))))............. ( -21.30) >DroYak_CAF1 73319 93 - 1 CAGCAAAAAGUUAUUGCUAAACUGAAACAGAAACACAGUG---GUGGCUAAUAAGCAUCACACAUGCUGCGCCAGGUUUUUGUAACUUCUCUUGGG .(((((.......)))))........((((((((...(((---(((.((....)))))))).....(((...)))))))))))............. ( -19.00) >consensus CAGCAAAAAGUUAUUGCUAAACUAAAACAGAAACACAGUG___GUGGCUAAUAAGCAGCACACAUGCUGUGGCAGGUUUUUGUAAUUUCACU__G_ .(((((.......)))))..((.(((((.....(((((((...((((((....)))..)))...)))))))....))))).))............. (-17.70 = -17.98 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:08 2006