| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,088,188 – 13,088,278 |
| Length | 90 |
| Max. P | 0.557367 |
| Location | 13,088,188 – 13,088,278 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 85.34 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13088188 90 + 22407834 AAAUGUUUUACGCUUCAGCGGAGCAAUUAGCGUUGCUUUGGUUAAACGAAACGAGCUGAGGGGAAAAAUUCUGGGAAAUAGGGUAGGAAA--------- .....((((.(.(((((((((((((((....)))))))).(((......)))..))))))).)))))((((((.....))))))......--------- ( -22.40) >DroSec_CAF1 69362 89 + 1 AAAUGUUUUACGCUUCAGCGGAGCAAUUAGCGUUGCUUUGGUUAAACGAAACGAGUUGAGG-GAAAAAUGCUGGGAAAUAGGGUAGGAAA--------- .....((((((.((((((((...(..(((((.(((.((((......)))).))))))))..-).....)))))).....)).))))))..--------- ( -20.00) >DroSim_CAF1 67114 90 + 1 AAAUGUUUUAUGCUUCAGCGGAGCAAUUAGCGUUGCUUUGAUUAAACGAAACGAGAUGAGGGGAAAAAUUCCGAAAAAUAGGGUAGGAAA--------- ...((..((((..(((..(((((((((....)))))))))....................((((....)))))))..))))..)).....--------- ( -16.20) >DroEre_CAF1 70483 96 + 1 AAAUGUUUUACGCUGCAGCGGAGCAAUUAGCGUUGCAUGGGUUAAACGAAACGAGCUGAGG-GGAAAAUGCUGGAAAA-A-UGCUGGAAAACAGGGUAG ...(((((.((.((((((((((....))..))))))).).)).)))))...(.(((.....-.......))).)....-(-(.(((.....))).)).. ( -21.80) >consensus AAAUGUUUUACGCUUCAGCGGAGCAAUUAGCGUUGCUUUGGUUAAACGAAACGAGCUGAGG_GAAAAAUGCUGGAAAAUAGGGUAGGAAA_________ ....(((((.(.(((((((((((((((....)))))))).(((......)))..))))))).).))))).............................. (-13.69 = -14.62 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:05 2006