Locus 4562

Sequence ID 2L_DroMel_CAF1
Location 13,084,589 – 13,084,693
Length 104
Max. P 0.555785
window7187

overview

Window 7

Location 13,084,589 – 13,084,693
Length 104
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.89
Mean single sequence MFE -24.68
Consensus MFE -15.42
Energy contribution -15.53
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -1.47
Structure conservation index 0.62
SVM decision value 0.04
SVM RNA-class probability 0.555785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13084589 104 + 22407834
AGAGGCCAGU-AUGAGAAAAUA-----GCAAAAGAA----ACG---ACUGCAAAUUGUAUGGCAU-UAAGAGACACUGU-UGCCAGAUCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
........((-((((...((((-----(((......----...---..))).........(((((-((((((.((((..-...........)))))))))))))))))))..)))))). ( -20.42)
>DroPse_CAF1 85098 113 + 1
AGAUGUAGCG-UCGUGCACAUUCGUAUGUGUAAGAAAACCCCG---ACUGCAAAUUGUAUGGCAU-UAAGAGACAUUGU-UGCCAUAGCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
.........(-((((((((((....))))))).........))---)).((((((((...(((((-((((((.((((..-.((....))..)))))))))))))))...))))).))). ( -30.20)
>DroEre_CAF1 66986 104 + 1
AGAGGCAAGU-UUGAGAAAAUA-----GUAGAAGAA----GCC---GCUGCAAAUUGUACGGCAU-UCAGAGACACUGU-UGCCAGAGCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
....(((...-((((..(((((-----.((((((..----(((---(.(((.....)))))))..-.......((((..-.((....))..)))))))))).))))).))))...))). ( -24.60)
>DroYak_CAF1 66208 105 + 1
AGAGGCAAGU-AUGUGAAAAUA-----GCUGAAGAA----ACG---ACUGCAAAUUGUAUGGCAU-UAAGAGACUCUGUUUGCCAGAGCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
.......(((-.(((....)))-----)))......----...---...((((((((...(((((-(((((((((..((((....))))..))).)))))))))))...))))).))). ( -22.90)
>DroAna_CAF1 52708 109 + 1
ACGGACGGCUAACAAAAAAAGA-----AAAGAAGAA----ACGCCAACUGCAAAUUGUAUAGCAUUUAAGAGACAUUGU-UGCCAUAGCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
......(((.............-----.........----..)))....((((((((...((((((.(((((.((((..-.((....))..)))))))))))))))...))))).))). ( -19.76)
>DroPer_CAF1 81895 113 + 1
AGAUGUAGCG-UCGUGCACAUUCGUAUGUGUAAGAAAACCCCG---ACUGCAAAUUGUAUGGCAU-UAAGAGACAUUGU-UGCCAUAGCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
.........(-((((((((((....))))))).........))---)).((((((((...(((((-((((((.((((..-.((....))..)))))))))))))))...))))).))). ( -30.20)
>consensus
AGAGGCAACU_ACGAGAAAAUA_____GUAGAAGAA____ACG___ACUGCAAAUUGUAUGGCAU_UAAGAGACACUGU_UGCCAGAGCUAAGUGCUUUUAAUGUUUAUUAAUUAUGCA
.................................................((((((((...(((((.((((((.((((....((....))..)))))))))))))))...))))).))). (-15.42 = -15.53 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:04 2006