Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,064,354 – 13,064,446 |
Length | 92 |
Max. P | 0.924557 |
Location | 13,064,354 – 13,064,446 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -22.51 |
Consensus MFE | -6.08 |
Energy contribution | -7.96 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.16 |
Mean z-score | -2.28 |
Structure conservation index | 0.27 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13064354 92 + 22407834 UCCCAGCGAGACUGCA---GUACGUACAUACGUAUAUACCAUCAAACAAACGGUUCCUGCCUCUAGAAU------------CUGUACCUGCAGCUC----UGCAUUUGAAU .....(((((.(((((---((((((((....))))................(((....)))........------------..))).)))))))))----.))........ ( -22.60) >DroSec_CAF1 45984 92 + 1 UCCCAGCGAGACUGCA---GCACGUACAUACAUAUAUACCAGCAAACAAACGGCUCCUGCCGCUUGUAU------------CUGUACCUGCAGCUC----UGCAUUUGAAU .....(((((.(((((---(...(((((((....)))........((((.((((....)))).))))..------------..)))))))))))))----.))........ ( -26.90) >DroSim_CAF1 41681 104 + 1 UCCCAGCGAGACUGCA---GCACGUACAUACAUAUAUACCAGCAAACAAACGGCUCCUGCCGCUUGUAUCUGUAUCUGUAUCUGUACCUGCAGCUC----UGCAUUUGAAU .....(((((.(((((---(...(((((((((.(((...(((...((((.((((....)))).))))..)))))).))))..))))))))))))))----.))........ ( -34.00) >DroEre_CAF1 45843 91 + 1 UCCCAGCGAAACUCCACCAAUACGUAUAU--------ACCUCCAAGCAAACGCCUCCUUCCUCUUGUAU------------CUGUAUCUGCAGCUCUGGCUGCAUUUGAAU ......((((.........(((((.((((--------(.......((....))...........)))))------------.))))).((((((....))))))))))... ( -12.87) >DroYak_CAF1 45652 93 + 1 UCCCAGCGAGACUCCA---ACACAUAUAUACUCGU--ACCUCCAA-CAAACGACUCCUGCCUCUUGUAU------------CUGUGCCUGCAGCUCUGGCUGCAUUUGAAU ...((((.(((((.((---.((((.(((((.((((--........-...))))(....).....)))))------------.))))..)).)).))).))))......... ( -16.20) >consensus UCCCAGCGAGACUGCA___GCACGUACAUACAUAUAUACCACCAAACAAACGGCUCCUGCCUCUUGUAU____________CUGUACCUGCAGCUC____UGCAUUUGAAU .....(((((.(((((...((((((....))....................(((....)))......................)))).)))))))).....))........ ( -6.08 = -7.96 + 1.88)
Location | 13,064,354 – 13,064,446 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -14.90 |
Energy contribution | -16.26 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.28 |
Mean z-score | -1.94 |
Structure conservation index | 0.50 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13064354 92 - 22407834 AUUCAAAUGCA----GAGCUGCAGGUACAG------------AUUCUAGAGGCAGGAACCGUUUGUUUGAUGGUAUAUACGUAUGUACGUAC---UGCAGUCUCGCUGGGA .(((....((.----((((((((((((((.------------.((((......))))((((((.....)))))).........)))))...)---))))).)))))..))) ( -25.60) >DroSec_CAF1 45984 92 - 1 AUUCAAAUGCA----GAGCUGCAGGUACAG------------AUACAAGCGGCAGGAGCCGUUUGUUUGCUGGUAUAUAUGUAUGUACGUGC---UGCAGUCUCGCUGGGA .(((....((.----(((((((((...(((------------..(((((((((....)))))))))...)))((((((....))))))...)---))))).)))))..))) ( -37.90) >DroSim_CAF1 41681 104 - 1 AUUCAAAUGCA----GAGCUGCAGGUACAGAUACAGAUACAGAUACAAGCGGCAGGAGCCGUUUGUUUGCUGGUAUAUAUGUAUGUACGUGC---UGCAGUCUCGCUGGGA .(((....((.----((((((((((((((..((((.((((((..(((((((((....)))))))))...)).))))...)))))))))...)---))))).)))))..))) ( -40.90) >DroEre_CAF1 45843 91 - 1 AUUCAAAUGCAGCCAGAGCUGCAGAUACAG------------AUACAAGAGGAAGGAGGCGUUUGCUUGGAGGU--------AUAUACGUAUUGGUGGAGUUUCGCUGGGA .......((((((....)))))).......------------...............((((...((((.(.(((--------((....)))))..).))))..)))).... ( -19.60) >DroYak_CAF1 45652 93 - 1 AUUCAAAUGCAGCCAGAGCUGCAGGCACAG------------AUACAAGAGGCAGGAGUCGUUUG-UUGGAGGU--ACGAGUAUAUAUGUGU---UGGAGUCUCGCUGGGA .......(.((((.(((.((.(((.((((.------------((((....(((....)))..(((-(.......--))))))))...)))))---)).))))).)))).). ( -24.00) >consensus AUUCAAAUGCA____GAGCUGCAGGUACAG____________AUACAAGAGGCAGGAGCCGUUUGUUUGCUGGUAUAUAUGUAUGUACGUGC___UGCAGUCUCGCUGGGA ...............((((((((.((((.................((((.(((....))).)))).......((((((....))))))))))...))))).)))....... (-14.90 = -16.26 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:01 2006