Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,340,269 – 1,340,365 |
Length | 96 |
Max. P | 0.577420 |
Location | 1,340,269 – 1,340,365 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.93 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -15.38 |
Energy contribution | -15.27 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -1.20 |
Structure conservation index | 0.77 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1340269 96 - 22407834 -------UUUUUCCCCACUGGC---------CACACUUUCCAGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC -------............(((---------(((................)))))).........--((((.(((((..(((((........)))))..)).))).)))).... ( -20.19) >DroSec_CAF1 97630 96 - 1 -------CUUUUCCCCACUGGC---------CACACUUUCCCGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC -------............(((---------.........(((((....)))))........)))--((((.(((((..(((((........)))))..)).))).)))).... ( -21.03) >DroSim_CAF1 101591 92 - 1 -----------UCCCCACUGGC---------CACACUUUCCCGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC -----------........(((---------.........(((((....)))))........)))--((((.(((((..(((((........)))))..)).))).)))).... ( -21.03) >DroEre_CAF1 110792 112 - 1 UCUUACCUUUCUCCCCACUUGCCACGCUUGCCACGCUUUCCCGCUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC ........................(((.(((.((((....(((((....))))).......((((--....))))))...((((........)))))).))).)))........ ( -22.00) >DroYak_CAF1 101551 96 - 1 -------UUUUUCCCCACUUGC---------CACACUUUCCCACUCCUCGGUGGCUUUUCUUGCC--UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC -------.............((---------(((................)))))..........--((((.(((((..(((((........)))))..)).))).)))).... ( -19.49) >DroAna_CAF1 124177 76 - 1 --------------CCACU------------------------CUGCUUUCUGGCUUUUGUUGCCGCUGUUGGCAGCUCUUUUGUUUUUUCCUCAAGUUGCAUGCGAACAACAG --------------.....------------------------(((......(((.......)))..((((.(((((...((((.........))))..)).))).)))).))) ( -16.00) >consensus _______UUUUUCCCCACUGGC_________CACACUUUCCCGCUCCUCGGUGGCUUUUCUUGCC__UGUUGGCAGCUCUUUUGUUUUUAACCAGAGUUGCAUGCGAACAACAC ....................................................(((.......)))..((((.(((((..(((((........)))))..)).))).)))).... (-15.38 = -15.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:38 2006