Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,060,989 – 13,061,083 |
Length | 94 |
Max. P | 0.603835 |
Location | 13,060,989 – 13,061,083 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.84 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -23.82 |
Energy contribution | -23.78 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13060989 94 - 22407834 CGGGAAGAAACAAUCGGGCCCAAGCAAAUGGCAAACUUUGCGA--------------------------GACUUAUCCGUAAAUUAAACUUGGAAAACAACCAAGUUUUGAUUGGACGGU .(((..((.....))...)))..(((((.(.....))))))..--------------------------.......((((.((((((((((((.......))))).)))))))..)))). ( -24.70) >DroSec_CAF1 42602 117 - 1 CGGGAAGAAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAA--CAACAGGACUUAUCCGUAAAUUAGACUUGGA-AACAACCAAGUUUUGAUUGGACGGU .(((..((.....))...)))..(((((.(.....)))))).........(((((.((...--.....)).)))))((((.((((((((((((.-.....))))).)))))))..)))). ( -29.40) >DroSim_CAF1 38265 117 - 1 CGGGAAGAAACAAUCGAGCCCAGGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAG--CAACAGGACUUAUCCGUAAAUUAGACUUGGA-AACAACCAAGUUUUGAUUGGACGGU .(((..((.....))...)))..(((((.(.....))))))..((..((((.....)))))--)............((((.((((((((((((.-.....))))).)))))))..)))). ( -29.70) >DroEre_CAF1 42330 118 - 1 CGGGAAGGAACAAUCGAGCCCGAGCAAAUGGCAAACUUUGCCAGCAAUUGGUUAGACCAAG--CAACAGGACUUAUCCGUAAAUUAGACUUAGAGAGCAGACGAGUUUUGAUUGCACGGU ((((...((....))...)))).((...(((((.....)))))))..((((.....))))(--((((((((((..((.((................)).))..))))))).))))..... ( -30.49) >DroYak_CAF1 42210 120 - 1 CGGGAAGGAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCCAGGAUUUGGUAAGACCAAGACCAACAGGACUUAUCCGUAAAUUAGACUUGGAGAACAACCGAGUUUUGAUUGCACGGU .(((...((....))...)))((((...(((((.....)))))((.(((((.....))))).)).....).)))..((((.((((((((((((.......))))).)))))))..)))). ( -32.90) >consensus CGGGAAGAAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAG__CAACAGGACUUAUCCGUAAAUUAGACUUGGA_AACAACCAAGUUUUGAUUGGACGGU .(((..((.....))...)))..(((((.(.....))))))......((((.....))))................((((.((((((((((((.......))))).)))))))..)))). (-23.82 = -23.78 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:57 2006